Gene TDE0782 details

Gene Information

• Locus tag: TDE0782
• Symbol: rplF
• ID: 2740660
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 813110
• End bp: 813649
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637159655
• Product: 50S ribosomal protein L6
• Protein accession: NP_971392
• Protein GI: 42526294
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.0731321
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAAGAG TTGGAAAAAT GCCTGTTGCT ATTCCTGCAG GTGTAAAAGT GAACGTTGCA 
AACGGTATCT TTACCGTTGA AGGCCCCAAG GGAAAACTTT CACAAGATTA TCACACTGAA 
GCTGTTGATT TTAAGATTGA AGGCGATCAT GTTCTTGTAA CAAGAAAAGA TGATGAACTT 
CAGACAAGGG CTTATCACGG TTTATACCGA AGTCTTCTTA ACAACATGGT AACCGGCGTA 
AGCACAGGCT TTACAAAGAC CTTGGTAATC AATGGTGTAG GTTACAGAGC TGAAGTTCAA 
GGCAAACTCC TTGTAATGGC TTTGGGTTAT TCAAACGACT TTTCCGTTAT TATTCCCGAA 
GGAATCGAAG TAAAGGTTGA CCAGCTGAAA GTTATTATTT CGGGAGCTTC AAAAGAAGCG 
GTCGGACAGT TTGCTTCACA GGTACGAAAG TTGAGAGGCC CTGAACCCTA TAAGGGCAAG 
GGAATTCGTT ACGAAGACGA AATCATCAAA CGAAAAGTCG GTAAGTCCGG TGTAAAGTAA 

 

Protein sequence

MSRVGKMPVA IPAGVKVNVA NGIFTVEGPK GKLSQDYHTE AVDFKIEGDH VLVTRKDDEL 
QTRAYHGLYR SLLNNMVTGV STGFTKTLVI NGVGYRAEVQ GKLLVMALGY SNDFSVIIPE 
GIEVKVDQLK VIISGASKEA VGQFASQVRK LRGPEPYKGK GIRYEDEIIK RKVGKSGVK