| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0588 |
|---|
| Symbol | hutH |
|---|
| ID | 2741551 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 626590 |
|---|
| End bp | 628113 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637159464 |
|---|
| Product | histidine ammonia-lyase |
|---|
| Protein accession | NP_971202 |
|---|
| Protein GI | 42526104 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2986] Histidine ammonia-lyase |
|---|
| TIGRFAM ID | [TIGR01225] histidine ammonia-lyase
[TIGR01226] phenylalanine ammonia-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTAA AACCAGTAAC AGTAACCGGC AGCAGTTTAA CAATAGAAGA CGTTGTAGCT
GTTGCCCGCC ACGGAGCGGA AGTAAAGCTG TCCGCAGATG CAAAAAAAAG AATCAAAGAT
TCAAAGAAGA TTGTAGATGA TATCGTAAAA AGCGGTAAAC CTACTTACGG CATTTCGACC
GGCTTTGGAG AATTATCCAC CGTAACCATT ACCAAGGATC AAAACGGTGC TCTGCAGAGG
AATTTAATAT TAAGCCATGC CTGCGGTGTA GGCAATCCCT TCCCCGAAGA CATAGTTAGG
GCTATAATGC TTTTAAGGCT TAACACTCAT GCGAGCGGTT TTTCGGGAGT AACCCCGTCT
GTCCCGGATA TTCTTGTAGA TATGTTAAAC AAGGGTGTAA TCCCCTATGT ACCCGAAAAA
GGTTCATTAG GAGCAAGCGG TGACTTGGCA AACCTTGCTC ATATTGCCCT TGTAATGATA
GGAGAGGGAA AGGCCTATTA TGAGGGCAAG CTTATGGAAG GAAAGGCAGC TCTTGCAAAA
GCCGGTTTAA AGCCTGTCGT CCTTTCGGGA AAAGACGGAC TCGGTATAAT TAACGGTACA
CCCGTAATGT CCGGTATCGG AGCCTTAGCC CTGCACGATG CAGAACAGCT TCTCAAGGCT
GCAAACATGG GCGCTTCCTT GGTATTTGAA GCCTTTAGGG GAATTACCGC AGCCCTCGAC
CCCAGAATCC ATAAATCCCG TCCGCACAAG GGACAGATTG ATACGGCCGC CTTTATTCTC
AAAATGTTAA AGGGCAGTTC ATCTATCAAT ACAAGAGAAA ATGACGTTCA AGACCCCTAT
ACGCTCAGAT GCGTTCCGCA AGTTCACGGA GCAAGTGCCG ATGCTATTGC CTATGTGCGC
AAGGTTTTAG AGATAGAAAT CAATGCCGTA ACCGATAACC CGCTCGTCTT CCCGGACAAT
CATGATGTTA TTTCAGGCGG AAACTTCCAC GGTCAGCCCA TAGCTATTAC TATGGACTTC
TTGGGGATTG CCGTCAGCGA GCTTGCAAAC ATAAGCGAGC GCCGAATCGA ACGCCTTGTA
AACCCGCAGT TAAACGGAGG CCTTCCTGCC TTCTTAATAG AAAACGGCGG AGTAAATTCA
GGCTTTATGA TCCCTCAATA TACGGCGGCC TCCCTTGTTT CGGAAAACAA GGTATTGGCT
CATCCTGCCA GTGTTGACTC CATTACCTCA TCAGGAAATA AGGAAGACCA CGTAAGTATG
GGAACAACCG CTGCCCGAAA AATAACCGAA ATCGTTAAAA ACGTACGCCA TGTTCTTGCT
ATTGAGTGGC TTACGGCTGC TCAAGCCTGC GATTTAAGGG GAGTAAAAAA GTACGGCAAG
GGAACAGGAG AGATGATGAA GCTTATTCGA AAGCATATCT CCAAGGTTAC CGAAGACCGC
ATTCTTTATA ACGACATTAT GAAGGCTCTT GAGATTATTT CAAATGATGA AAACATTGAC
ATGATTGAAA ATGCTGCTAA GTAA
|
|---|
| Protein sequence | MKVKPVTVTG SSLTIEDVVA VARHGAEVKL SADAKKRIKD SKKIVDDIVK SGKPTYGIST
GFGELSTVTI TKDQNGALQR NLILSHACGV GNPFPEDIVR AIMLLRLNTH ASGFSGVTPS
VPDILVDMLN KGVIPYVPEK GSLGASGDLA NLAHIALVMI GEGKAYYEGK LMEGKAALAK
AGLKPVVLSG KDGLGIINGT PVMSGIGALA LHDAEQLLKA ANMGASLVFE AFRGITAALD
PRIHKSRPHK GQIDTAAFIL KMLKGSSSIN TRENDVQDPY TLRCVPQVHG ASADAIAYVR
KVLEIEINAV TDNPLVFPDN HDVISGGNFH GQPIAITMDF LGIAVSELAN ISERRIERLV
NPQLNGGLPA FLIENGGVNS GFMIPQYTAA SLVSENKVLA HPASVDSITS SGNKEDHVSM
GTTAARKITE IVKNVRHVLA IEWLTAAQAC DLRGVKKYGK GTGEMMKLIR KHISKVTEDR
ILYNDIMKAL EIISNDENID MIENAAK
|
|---|
| |