Gene TDE0438 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE0438 
Symboltgt 
ID2740584 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp493762 
End bp494901 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content41% 
IMG OID637159310 
Productqueuine tRNA-ribosyltransferase 
Protein accessionNP_971052 
Protein GI42525954 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0343] Queuine/archaeosine tRNA-ribosyltransferase 
TIGRFAM ID[TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0600679 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGAAA AAAAAGAAAT TTTTACACTT TTACATCAAG ATGCGGCTTC TCCTGCAAGG 
ACGGGAGTTT TGGAGCTGCC TCATGGAAAG GTGCTTACAC CGGCCTTTAT GCCTGTGGGA 
ACGGCGGCTA CCGTAAAGGC GATGACAAAG GATGACTTAG ACGAAATAGG TTTTGAAATT 
ATTTTGGCCA ATACATACCA TCTTTTTTTA CGCCCGGGAA TTGAAGTTAT AAAAGCGGCT 
GGAGGCTTAC ACGGCTTTTC AGACTGGAAA AAAAACTTTT TAACCGATTC AGGGGGCTTT 
CAAGTTTTTT CGCTTTCACA ATTAAGAAAA ATTACCGAAG AGGGTGTAAA ATTTCAAAGC 
CATATAGACG GAAGCCGTCA ATTTTTAAGC CCTGAAATTG CGGTAGAATT GCAGACGGGT 
TTTAACAGCG ACATTCAAAT GCAGCTGGAC ATCTGCTCTT CTTTTGGGAT AAGCAAAACC 
CAAACCCTTG CCGACCTTAA AATAACTATG AACTGGCTCG ACAGGGCCTT TGCAGCTTGG 
CACAATACCC CCCATGAATA TGACGGAGCC CTCTTTCCTA TAGTACAAGG CGGGTTCTTT 
GAAGACCTAA GACTTCAAAG TCTTGAAGCT ATCTTAAAGC ATGAGCCTAG GGGAATTGCC 
ATAGGCGGCC TTTCCATAGG AGAACCTAAA GACCTCTACC AAGAATATTT GAGCTTTACC 
GCAAAGCACA TCCCTAAAAA TAAACCCCTC TATGTAATGG GAATCGGAAC TCCCGACTAC 
ATCCTAGAGG CTGTAAAAAA CGGAGTCGAT ATTTTTGATT GCGTACTGCC TTCCCGAAAT 
GCCCGAAACG GAAACCTTTT TACCCATGAA GGAGCCATTT CAATTAAACG GAAAGAGTAC 
GAATTTGACT TTAACCCGAT CGATTCTCAA TGCAAGTGCA AGGTTTGCCG ACAATATACA 
AGGGCCTATT TGCGGCATTT ATTTAGAACA AAAGAAATTT TATACTCAAT GCTTGCAACC 
TATCATAACT TGGCTTTTTT ATATAGTATG GTACAAGACA TAAGAGAGGC CATCCAAAAT 
GATTCTTTTA ACGATTATTA TAAAAACTTT TTAAAGAAAT ATGAAAATCG TTTAGACTGA
 
Protein sequence
MKEKKEIFTL LHQDAASPAR TGVLELPHGK VLTPAFMPVG TAATVKAMTK DDLDEIGFEI 
ILANTYHLFL RPGIEVIKAA GGLHGFSDWK KNFLTDSGGF QVFSLSQLRK ITEEGVKFQS 
HIDGSRQFLS PEIAVELQTG FNSDIQMQLD ICSSFGISKT QTLADLKITM NWLDRAFAAW 
HNTPHEYDGA LFPIVQGGFF EDLRLQSLEA ILKHEPRGIA IGGLSIGEPK DLYQEYLSFT 
AKHIPKNKPL YVMGIGTPDY ILEAVKNGVD IFDCVLPSRN ARNGNLFTHE GAISIKRKEY 
EFDFNPIDSQ CKCKVCRQYT RAYLRHLFRT KEILYSMLAT YHNLAFLYSM VQDIREAIQN 
DSFNDYYKNF LKKYENRLD