| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0406 |
|---|
| Symbol | |
|---|
| ID | 2740152 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 457370 |
|---|
| End bp | 458989 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637159278 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_971020 |
|---|
| Protein GI | 42525922 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.220089 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTG ATTTTTCGCG CAAGATACCG ATAGGTATTC AAAGTTTTGA AGATTTACGC
AGAAAAAACT TTTTATATGT AGATAAAACT CTATATGCTT TTAAGCTGGC CAACTTAGGG
AAGGTATACT TTTTAAGCCG TCCCCGCCGC TTTGGAAAAA GTCTTTTTCT CTCGACTCTC
AAGGCTTATT TTTTAGGACA AAAAGAGCTT TTTAAGGGCT TGTACATCGA AAAGGCTGAA
GAAAAGCGGG CCGAAATCGA AAAAAACGAA GCATGGGGTG AGTATCCTGT TTTCTACTTG
GATTTTAATG TGGGTCGATA TGACTTGGAT GGTGCTCTTG CAGAAAGCCT CGACTACTTT
TTAAAAAAAG AAGAAAAAAT CTACAGGCTA AAAAACGAAG GCGATTCTTT CGGAAAACGT
TTTCAGTCAC TCATAGAAAC CGCCTACAAT AAAACCGGCA AGCAGGCGGT TATTCTTGTG
GACGAATATG ATAAACCCCT TTTACAAACA ATGGGTGTAA ACGAGGCTCT AAATGAAGAA
TACCGCAATA CCCTCAAAGC CTTTTATTCT GTAATAAAAA CTTGCGACCA ATATATCCGC
TTTGCTTTTT TGACGGGAGT TACAAAGTTC AGTAAGGTAA GTATCTCTAG CGACTTAAAT
AATCTGCAAG ATATAAGTAT GCTCAATGAC TATGCTGAAA TATGCGGATT GACTCAAGCC
GAGATAGAAA AAACCTTTAA GCCTGAAATA GAAAGACTGG CGAAGAACAC CAAAAACAGC
TATGATAAAA TGCTTGAAGA ATTAAAAAAG CGGTACGACG GCTATAAGTT CAGTGTTTTA
GGAGAATCTG TCTATAACCC ATTTAGCATA TTAAATACTT TCAACTCTGG TGAATTAAAA
AACTATTGGT TTGCAACAGG CACACCAACC TTTTTGGTAA ATTATCTAAA AGCTGCTCAT
TATAATATTC CAGACTTAGA TGGAAAGGTA GAGCTTGATG AGTCCATGCT GAATGAATAT
AGAGCCGATG CAAAAGACCC CATACCTATA CTTTTTCAAT CGGGTTATTT AACGATAAAA
GAATACATAG AAGAAGTTAA TATGTATCGC TTAGGCTTTC CGAATGATGA GGTACGTTAT
AGCTTTTTAG AAAATCTTGT ACCTGCCTAT TCTTCGCTTA GAGCCGATGA AACGGGAGTT
TCAATATGGA AATTTGTAGA AGACATAAGG GCCGGGAATG TGGATGATTT TATGGATAGG
ATGCAGGCTA TAATAGCCGG TGTGCCTTAC GATAATCTTC CAAAAGATAA ACTTAAATTG
AGAGAGCAAA ACTACCAGAC TGCCGTTTAC CTAATCTTTA AACTTATGGG GCAATTTGTG
CAAACGGAAA TACACTGTTT AAAAGGCAGA GCCGATTGTA TAGTGCACAC TAAAGATTCC
ATATACATCT TTGAGTTTAA GTTGATGAGT GCAGGTACGG CAGAAGATGC AATAGTCCAA
ATAAAAGAAA ATGGCTATGC CGCTCAATTT AAGACAAGCA GCAAAAAGAT AATTCTGATA
GGTTCGAGTT TTAATGAGGA GGAAAGGACT ATCGGCGAAT GGAAGACGGA AGAACTTTAA
|
|---|
| Protein sequence | MDFDFSRKIP IGIQSFEDLR RKNFLYVDKT LYAFKLANLG KVYFLSRPRR FGKSLFLSTL
KAYFLGQKEL FKGLYIEKAE EKRAEIEKNE AWGEYPVFYL DFNVGRYDLD GALAESLDYF
LKKEEKIYRL KNEGDSFGKR FQSLIETAYN KTGKQAVILV DEYDKPLLQT MGVNEALNEE
YRNTLKAFYS VIKTCDQYIR FAFLTGVTKF SKVSISSDLN NLQDISMLND YAEICGLTQA
EIEKTFKPEI ERLAKNTKNS YDKMLEELKK RYDGYKFSVL GESVYNPFSI LNTFNSGELK
NYWFATGTPT FLVNYLKAAH YNIPDLDGKV ELDESMLNEY RADAKDPIPI LFQSGYLTIK
EYIEEVNMYR LGFPNDEVRY SFLENLVPAY SSLRADETGV SIWKFVEDIR AGNVDDFMDR
MQAIIAGVPY DNLPKDKLKL REQNYQTAVY LIFKLMGQFV QTEIHCLKGR ADCIVHTKDS
IYIFEFKLMS AGTAEDAIVQ IKENGYAAQF KTSSKKIILI GSSFNEEERT IGEWKTEEL
|
|---|
| |