| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0328 |
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| Symbol | cas1 |
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| ID | 2741544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 365205 |
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| End bp | 366077 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 637159200 |
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| Product | CRISPR-associated Cas1 family protein |
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| Protein accession | NP_970942 |
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| Protein GI | 42525844 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
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| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03639] CRISPR-associated endonuclease Cas1, NMENI subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTGGA GAACCGTTGT TATTTCAAAT AGGGCAAAGC TGGATTTACA CTTAAATCAT
CTAGTAGTTC GGGGTGAAAA AACTCAAAAA GTTTTTATCG AAGAAATTTC AGTTTTAATC
ATTGAAACGA CAGCGGTATC TATAACCGCA GCCTTATTAA ATGAGCTTAT AAAACAAAAG
GTTAAGGTAA TTTTTTGTGA CGAAAAACGA AATCCGGCTT CTGAATTGAT AGGATATTAC
GGCAGCCACG ATACCAGCGA AAAAATCAGG CTTCAAATAA AATGGGATAA GAATATCAAA
CAGCTTGTAT GGACTGAGGT CGTAACAGAA AAAATAAGAC AGCAAAAATA CCTCTTAGAA
AAACTGAATC TTCCGCAAGC AAGTTTACTG GCTGAGTATA TTACGGATAT AGATATTAAC
GATAAAACAA ATAAGGAAGC CCATGCTGCA AAAGCATATT TTGCAGCGTT ATTTGGAGCA
GGTTTTTCCA GAAGTTTGGA TATTCCTATA AATGCCGCTC TAAATTACGG ATATAGCATC
TTACTTTCTG CATTTAATCG TGAAATAATA GCAAACGGTT ATATTACACA ACTGGGAATT
TTTCATGATA ATATGTTTAA TCCCTTTAAT CTCGGATCAG ACCTTATGGA GCCTTTTAGG
CCTCTCGTTG ATGCAGAAGT TTTTAAACTT AATCCTCAAA AATTTGAACA TGAAGAAAAA
CTAAAAATAG TTAGTGTTAT AAATAAAAAG GTGCTCATAA ACAATAAAGA GCATTATCTA
AATAAAGCTA TCGAAATTTT TGTACACAGT ATTTTTGATG CTCTAAATGA AAAGGATATT
TCACAAATTA ACTTTTACCG AAATGAGTTA TAG
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| Protein sequence | MSWRTVVISN RAKLDLHLNH LVVRGEKTQK VFIEEISVLI IETTAVSITA ALLNELIKQK
VKVIFCDEKR NPASELIGYY GSHDTSEKIR LQIKWDKNIK QLVWTEVVTE KIRQQKYLLE
KLNLPQASLL AEYITDIDIN DKTNKEAHAA KAYFAALFGA GFSRSLDIPI NAALNYGYSI
LLSAFNREII ANGYITQLGI FHDNMFNPFN LGSDLMEPFR PLVDAEVFKL NPQKFEHEEK
LKIVSVINKK VLINNKEHYL NKAIEIFVHS IFDALNEKDI SQINFYRNEL
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