| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0308 |
|---|
| Symbol | |
|---|
| ID | 2741029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 339727 |
|---|
| End bp | 340776 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637159180 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_970922 |
|---|
| Protein GI | 42525824 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000052473 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TTTTATGTTT GATTTTTTGT TTTATGATGA CGGCAGGATT TTCTCAAAAT
AAAGAGGAAC TTAAAAACAA CAATGAAGAA GAGTCTTTAA ACATTTCCAA ATTTAATATT
CTTCCGCATT ATTTCGGATT TCCCCTTTCG GTAAAATTCG GATGGCTTTA CAGACAAAAT
AATTTCAGTG TTTTCCCGAA TACGGGAATC TTCTTTTCGG CAGACAACGG ACCCGCTATA
AGTTCTTCCA TAGGAATGTT TGTTCAAAAA GATTTTTTTA AATGGGATAT AAACGCTTTT
TATGATTTTG TTCCGTTTAC AATGCATAAA AAAGCTTCCG ACCAAATTGT TTATGCAAGA
AATAATTTTA TCTTTGTTAT AAACAGACTG AAAATTTCTT TCCCTGCCCG TGTGGGACGG
AGACTTGTTA ATGAAATAAA ATTTACCGGT TCACAAAAAG AGTTGCTGCC GAAAACAATT
ACCGAAATAT CGCAGGGAAT CAGGTTCGAT GTTTATCTTG CAGATTTAGG CTATCTTAAA
GCAACAACTT CTTTTTCTTT TTTTACCGAT TGGATTCCGG AAAGCCGTTT TGTTAATTAC
AGACTTAAAT TCGATTTGCC GGTAACATTT AAACTGTATT ATGTTGACGT GGGCTTTGTC
TATACTTTTT ATAATACCGG TAGGATAAAT TCTAAAAATA TAAATGCTGC CGCCGATTAC
CAAATAGAAA AATCTCAAGA AGCTATGACG CGGCGCTTTT CGTTTAAAGA TGTTCAAAAA
TATTCTTCGA TGCATATTTG GGGGGCTGAA ATTAGATGGT ACGCAGCTCG AACGGGCGTT
AATTCAAGCG GATTTTTTAT TTCAGCCTTT GCAGATGCCG GCTTCGGCTC TAACGAAGTA
AAAAAAATAA ACCTTATCGC CGAGTGCGGT TTAGGTGCAG GCTATACATT ATTTGATAAC
GTTCCTTTTA CATTCCAAGC CGGATTTAAT CAAGACTTTA AACCGATCTT TTTCTTAGGT
GTTGTATCCA GAATTATTCA GGGGGTTTGA
|
|---|
| Protein sequence | MKKILCLIFC FMMTAGFSQN KEELKNNNEE ESLNISKFNI LPHYFGFPLS VKFGWLYRQN
NFSVFPNTGI FFSADNGPAI SSSIGMFVQK DFFKWDINAF YDFVPFTMHK KASDQIVYAR
NNFIFVINRL KISFPARVGR RLVNEIKFTG SQKELLPKTI TEISQGIRFD VYLADLGYLK
ATTSFSFFTD WIPESRFVNY RLKFDLPVTF KLYYVDVGFV YTFYNTGRIN SKNINAAADY
QIEKSQEAMT RRFSFKDVQK YSSMHIWGAE IRWYAARTGV NSSGFFISAF ADAGFGSNEV
KKINLIAECG LGAGYTLFDN VPFTFQAGFN QDFKPIFFLG VVSRIIQGV
|
|---|
| |