| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0128 |
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| Symbol | |
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| ID | 2739584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 146380 |
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| End bp | 148785 |
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| Gene Length | 2406 bp |
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| Protein Length | 801 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 637158998 |
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| Product | HAMP domain/GGDEF domain/EAL domain-containing protein |
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| Protein accession | NP_970745 |
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| Protein GI | 42525647 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGATTAA AGCAGAAAAT TGTTCTCTCA AATGCAATAG TATTTAGTGC TCTTATAATT
ATTTCAGTAT TTTTTAACTT TTTTTATGCG GCAAATATTT TTTCAACAAA TCTCAACAAT
AAGAATAAAT TAAAGGCTAA GCTTATAGCC CAAGAGATAG ATGAATGGCT TATTGAAAAA
AAAACCGTTA TAGAGCAAAC CATAGATACC CTGATTTATA TGGACATTAC CGATTATGAA
AAATGTACCG ATTTTTTGGC AAACTTGAAT AGACTCAACC CTGAAACCGA TTATGCTGTA
TTTTACGAAA CAGGACTTTT TGCAAACGGT CAAAATTGGG TTCCTCCGGC TTTTTATGAC
TCGCGAAAAA GGCCTTGGTA CATTGAAGCA AAAAGTACTA AAGAAACAAT CATAACCAAT
CCGTATCACA GCATAAGCTC CCGCCCTGAC TCAATAGCGT TTTCCATTGT AAAACAATTT
ACTACAAAAA GCGGAGTTGA TGGAGTCTTT TTAGGCGAAA TAAGAATAAA GGAACTTTTA
TCTCTTATAG AAAAATTTAA AAATGAAGAC GGGGGTTATG CTTTTTTAAT AGGGAAAGAT
TACCGCATAT TATCTCATCC TAATGAAAAA TATCAATTCA ATCTTGATAA TTTTACGGAG
ATTTACAATA TTGAAGGCGG TATAGATTTT ATAGAATATA TAGCCAAATT AAAAATCGAT
GACGGCTATA ACAGAAGCTT ACCCATAGTA AAAGATTATG ACGGAGTTGA AAGGTTCTTT
TACTTTGCAC AGTCAGAAAC TACCGGCTGG ACGGTCGGTT TTACAATACC TGCATCGGAT
TTTTATCGTC CTATAAACGG TCTAAAATTC AGAGCAATAT TATTTGCATG TATCTTTATT
GTCTTCGTAA GTATCCTATC TTTCCTAATA GCAAAAAAAG TAGCTTCACC CATAGAAACT
ATTACAAACA GACTGGAAAA AGCCGCGAAA AACAATGAGC TTATTAAGTT TGATTTTTTA
GATAGGCAAA ATCACGAACT TGCAAGAATT GCAAAGAGTT TTAATTCCGT AGTGAAAAAT
GCAAAATCGA ATCTTCAGGG AGAAGCAAAT TTTACCCTAA ATTCAACCAC TCTGACTCAA
AAAATAGATA ACATAATTAT CAACATGAAT GCCGATGAAG AGGTCTATCT CTTATATTTG
GATATAGATA AGTTTAAAAC TATAAACCAG CTTTGGGGCT ATTATGCAGG AAATGCCCTA
ATACAGCACA TATATTCTAT GATTTTAGCT CATATAAAAT CATTTAATAT TCCCGAAGAC
TCTTTTATGC ATGTCATAGG GGACGAATTT TCAATCTTTT ATTTCGGAAA CGAGGAAGAA
GTATGTCGGT TCACACAAAC CCTTATCGAT AAAATAAATA GCGAATACTT TACTTGGAAC
GAAAAAAAAT TGACTATCTC CATAAGTGTC GGCATTGTAA ATATTCCTAA AATACCTCAG
AGCTCTCAAG AAATAATATC GAATGCATAT GATGCTTGCT CTATCGCCTT TAGAAAAGGA
GGAGGATGTT ACGAACTTTT ATTGTCTTCA GGAATAACAG GCTTCTCCAG AGGAAATATT
TCATTTTGGT TAAATACAAT CCAAAAGGCT CTTAAAGAGG ATAATTTCGT TTTATACGCA
CAGGCAATTA TGCCTCTAAA TGATTTGCTT CACCGTCCCA AGTATGAAAT TTTAATAAGG
CTTAAAACTA ATGATGATCA TATTATTATG CCCGATGTCT TTATTCCTAT AGCCGAAAGA
TATAATCTAA TATATGAAGT AGATAAGTGG GTTATAAGAA ATGCTTTTGC CTTTTTTGCA
GAAGCCACAA GTAAAGGGGA CTTAAACGAA GATGCAATAT TTTCAATTAA TATTTCGGCA
GACTCGTTTT TTTCAAATGA CCTTGTAGAA TTCATAGCTG AGAGCCGTAA AACATTAAAT
GTACCGGCTC ATAACTTCTG CTTTGAAATA ACGGAAAGCT GTGCAGTGAG AAACTTGGAA
GCGACATCAA CATTTGTTAC CGAATTGAGA AAACAAGGCT TCTCTTTTTC ATTGGATGAT
TTTGGAAAAG GCTTTTCTTC TTTCCCATAT TTAAAGACTC TTCCGATAGA TTACGTAAAA
ATTGACGGGT CTTTTATAAA GTCCATAGAT AAAGACTACA TAGATTTTTC TATGGTTAAG
ACAATGAGAG ATATGTGCTA CCATTTAGGT CTTTACACAA TAGGCGAGTA TGCGGAGACC
GACAAAATAG TTTCAATCTT AAAAGATATA GGTGTCGATT ACGGACAGGG ATATGCTTTT
CAAAAACCTA TTCCTATCGC AGAAGCTATA AAGCTTCAAA ACGATAGGAA CGGATATAGA
TTTTAG
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| Protein sequence | MRLKQKIVLS NAIVFSALII ISVFFNFFYA ANIFSTNLNN KNKLKAKLIA QEIDEWLIEK
KTVIEQTIDT LIYMDITDYE KCTDFLANLN RLNPETDYAV FYETGLFANG QNWVPPAFYD
SRKRPWYIEA KSTKETIITN PYHSISSRPD SIAFSIVKQF TTKSGVDGVF LGEIRIKELL
SLIEKFKNED GGYAFLIGKD YRILSHPNEK YQFNLDNFTE IYNIEGGIDF IEYIAKLKID
DGYNRSLPIV KDYDGVERFF YFAQSETTGW TVGFTIPASD FYRPINGLKF RAILFACIFI
VFVSILSFLI AKKVASPIET ITNRLEKAAK NNELIKFDFL DRQNHELARI AKSFNSVVKN
AKSNLQGEAN FTLNSTTLTQ KIDNIIINMN ADEEVYLLYL DIDKFKTINQ LWGYYAGNAL
IQHIYSMILA HIKSFNIPED SFMHVIGDEF SIFYFGNEEE VCRFTQTLID KINSEYFTWN
EKKLTISISV GIVNIPKIPQ SSQEIISNAY DACSIAFRKG GGCYELLLSS GITGFSRGNI
SFWLNTIQKA LKEDNFVLYA QAIMPLNDLL HRPKYEILIR LKTNDDHIIM PDVFIPIAER
YNLIYEVDKW VIRNAFAFFA EATSKGDLNE DAIFSINISA DSFFSNDLVE FIAESRKTLN
VPAHNFCFEI TESCAVRNLE ATSTFVTELR KQGFSFSLDD FGKGFSSFPY LKTLPIDYVK
IDGSFIKSID KDYIDFSMVK TMRDMCYHLG LYTIGEYAET DKIVSILKDI GVDYGQGYAF
QKPIPIAEAI KLQNDRNGYR F
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