Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE0125 |
Symbol | |
ID | 2741740 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | - |
Start bp | 142985 |
End bp | 144100 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 637158995 |
Product | GGDEF domain-containing protein |
Protein accession | NP_970742 |
Protein GI | 42525644 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACAA CTCCAAATGA AAAATTATTA AAAAAGGCAT TGCACTCATG CAATAATAAA AAATATGCCG ATAAAATTCT TCATCAGGAA AAAGAAATAT TTGATTTAAA ACAACTGCTG CAAATTTCAA AAAGTTTAAA TTCTGTTTTG GAATTTGACC GTCTTATTGA AGCAATATTA TATATAGTTA TGGCTCAGCT AAAAACCCTC GGAGCCGCAA TTTTTACAAA AAAATCCTTT GATGATAACC TTTTTGTATT AAATAGGGAC CATTACGGTT TTGATATAAT CCGCGATGCT CAATATTCTA TAAATGTAGA TCATCCGCTT ATAAATTTTT TGGATAAATC CGATTCGGGA TGCACTCCCG ATGAGATAAG TAAGAACATA AAAACGGATA AGATAGTAAA AGACTTATTC AGTCTTAGCC CTTCTTTTTT TGTACCCCTA AAAGCAAAAA ATAGGATGAT AGGCTTTTTG CTTTTAGGTG AAAAAATGGA AAGTTCCCAT CAATTTACGG ATTATGAAAA AAACATTATA GAAAACATAG CTTCCTTAGC TGCTATAGCC ATAAACAATT CTCAGCTTTT AGAAATGACT ACAACCGACA TAATGACTCA CCTAAAACTA AAGCATTATT TTTTTACTCT GTTGATGGAG CATTTGTATA CTATAAATTC TTCAGGCGAA AAAAAAGAAA CTCTTTCAAT TTTGATGATT GATATAGACT TTTTTAAGAA TATAAACGAT ACCTATGGTC ATGCTGCCGG AGATATTGTT TTAGAAGAGG TTGCAAAAAT TATAAAATCA TGTACAAGGA ATGCAGATAC GGCTGCAAGG TATGGCGGAG AAGAATTTAT AGTAATGCTT AACAATACTT CGGCTAGCGC TGCTATGGCT GTAGCCGAAA GAATAAGAAA ATCCGTAGAA GAGAAGTCCA TTATGTACGA CGGTAAAAAA ATTAATGTAA CTATTTCCAT AGGGGTATCA AGTTATAACT TTGATCTTGA GTCGGCAAAG TCTATAGTTG AAAGAGCTGA CAAGGCCCTA TACGAATCCA AGCAAAACGG ACGGAATCGT GTAACATTAT CCAAAAATAA CTTGCCTAAA GCTTAA
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Protein sequence | MKTTPNEKLL KKALHSCNNK KYADKILHQE KEIFDLKQLL QISKSLNSVL EFDRLIEAIL YIVMAQLKTL GAAIFTKKSF DDNLFVLNRD HYGFDIIRDA QYSINVDHPL INFLDKSDSG CTPDEISKNI KTDKIVKDLF SLSPSFFVPL KAKNRMIGFL LLGEKMESSH QFTDYEKNII ENIASLAAIA INNSQLLEMT TTDIMTHLKL KHYFFTLLME HLYTINSSGE KKETLSILMI DIDFFKNIND TYGHAAGDIV LEEVAKIIKS CTRNADTAAR YGGEEFIVML NNTSASAAMA VAERIRKSVE EKSIMYDGKK INVTISIGVS SYNFDLESAK SIVERADKAL YESKQNGRNR VTLSKNNLPK A
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