| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0101 |
|---|
| Symbol | |
|---|
| ID | 2741716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | - |
|---|
| Start bp | 119107 |
|---|
| End bp | 121251 |
|---|
| Gene Length | 2145 bp |
|---|
| Protein Length | 714 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637158971 |
|---|
| Product | alpha-amylase family protein |
|---|
| Protein accession | NP_970718 |
|---|
| Protein GI | 42525620 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAATA TGAACGATTT ATCTTTTTTT CAGGGAAAAG CTTCTCCATT AGGCGCAAAA
TTAAGCTGTG ATGGAGTGAA TTTCAGCGTC TTTTCACGAA ATGCAAAGGA AATAGTTCTA
CACTTATTTG AAAATGTAGA GGATTCCGAG CCGATAATCT CATATAAACT GGATCCTCAA
ATAAATAAAA CCGGTGATGT TTGGCATGTG TTTGTTTCCG GTTTAAAAAG TTGGGCATTT
TATTTGTATA CGGCTGACGG AGAGTTTTCT CCTTCCGCGG GTTTTTTATT CGATGAAAAT
AATTACTTGC TTGACCCTTA CGCAAGACTT ATAAGTTCTC ATTCGGTATT TAATTCGGAA
CAAACTTTTA ACCAAAAGGA CAGTAAAGCT TCAGGCGGTA AAAATCAACA TAAAAGAACG
GCAAAGGGAT TCCCAAAATG TGTAGTTATC GATGATAGGG AATTCGATTG GCAGGGAGAT
AAACCCTTAA ATATTCCGCT CCAAAAATGT GTGATATATG AAGCTCATGT AAAGGGCTTT
TCTTTTTTAA ACGATAAAAT AAGTCCTACA AAACGGGGTA AATATTCAGG TCTTGTGGAG
CTGATTCCGT ATTTAAAGGA TTTGGGAATT ACTTCTCTTG AGCTCCTGCC CGTTTTTGAT
TTTGATGAAA ATGAAAATAT GAATATAAAT CCTAAAACCG GCGTTAGGCT AAAAAACTAT
TGGGGATACA GCACAATTGC TTTTTTTGCA CCTAAGGCTC TCTATGCCGA AGACCCGGGC
AATGCCGTAA ACGAGTTTAA ATTTATGGTC AGGGAATTTC ATAAAGCGGG CATCGAAATA
ATCTTGGATG TGGTGTTTAA CCATACTGCG GAAGGAAACG AAAACGGCCC CGTTTTTTCT
TTTAAAGGAT TTGATAATTC CATTTACTAT CATCTTGAAG ATAATAAGTT TTATTATAAA
AACTTTTCGG GCTGCGGTAA CAGTCTAAAA ACCTCGGAGA TTCCTGTTAT AAAATTTATA
TTGGATTGCC TGCGGTATTG GGTAACTGAA ATGCATGTAG ACGGATTCCG TTTTGATTTG
GCTCCCGTTC TGGCACGCGA TAAAACCGGA AGTATAGATT TAAATTCTTT TATGATACAG
GCTATCGCAG ATGATTCCGT GCTTCGTTCT ACAAAGATTA TAGCTGAAGC ATGGGATGCT
GCCGGTGCAT ACATGGTAGG AAAATTTCCC GGGCGTTGGG CGGAATGGAA TGACTTATTC
CGTAACTCCG TCAGAGAGTT TTGGCTGCAG CCCAATCCGG ATATAAGACA CTTGGCAACC
AGAGTAACCG GTTCTGCGGA TTTATATTCT CAAAAAGGCA GAAGGCCTTA TCAGTCAATA
AATTTTGTCT GCTGTCATGA CGGCTTTACC CTTTGCGATT TGCTAAGTTA TTCCGAAAAA
CATAACGAAG AAAACGGGGA AAATAACCGA GACGGCTCAA ATGAAAATTT AAGCTATAAT
CATGGAATAG AAGGATCCGC ATCTGTCGAA ATTGAAAGAA TGCGTATGAG GTCTGCAAAA
AATATTTTGA CAACGCTTAT TCTTTCAGCC GGCACGCCCA TGATTAATAT GGGAGATGAG
GTATTCCGTA CACAAAACGG AAATAATAAT GCCTATTGTC AGGATAATGA AATGTCTTGG
TTTGATTGGG AACTTTTAAA TGAAAATAAG GACTTGCTCG AATTTACCAA AAAGCTTATC
AATTTAAGGA AGACTCATTT TTCTTTTTTA AGAAAACATT TTTTTACCGG AGCCTCGAAG
ATTAACGGCA CTCCAAGCGA TATAACTTGG TTTGATTATA ATGCGCAGAA ACCCAACTGG
AATGTACCTT CAAATTTTTT AGCCTTTTTA ATAGACGGCA ACAAAATTAA TTTGGAAAGC
GATGAAGATG ATAACGATTT TTATGTTATG ACCAATAGTT ACAATAACGA TATAACCGTG
AGACTTCCCC CTCCGTCTTC GGGCGGGAAG ATATGGCATC GTCTGATAGA CACCTCGTAC
ACCGACGGAA AAGATTTTTT AGATGAAGAA CATACCGAGC AGATTATGAA TCAGCAAATA
TATGTAGTGC TTTCCCGCAC AACTGTAGTT TTAATTGCAA AATAA
|
|---|
| Protein sequence | MMNMNDLSFF QGKASPLGAK LSCDGVNFSV FSRNAKEIVL HLFENVEDSE PIISYKLDPQ
INKTGDVWHV FVSGLKSWAF YLYTADGEFS PSAGFLFDEN NYLLDPYARL ISSHSVFNSE
QTFNQKDSKA SGGKNQHKRT AKGFPKCVVI DDREFDWQGD KPLNIPLQKC VIYEAHVKGF
SFLNDKISPT KRGKYSGLVE LIPYLKDLGI TSLELLPVFD FDENENMNIN PKTGVRLKNY
WGYSTIAFFA PKALYAEDPG NAVNEFKFMV REFHKAGIEI ILDVVFNHTA EGNENGPVFS
FKGFDNSIYY HLEDNKFYYK NFSGCGNSLK TSEIPVIKFI LDCLRYWVTE MHVDGFRFDL
APVLARDKTG SIDLNSFMIQ AIADDSVLRS TKIIAEAWDA AGAYMVGKFP GRWAEWNDLF
RNSVREFWLQ PNPDIRHLAT RVTGSADLYS QKGRRPYQSI NFVCCHDGFT LCDLLSYSEK
HNEENGENNR DGSNENLSYN HGIEGSASVE IERMRMRSAK NILTTLILSA GTPMINMGDE
VFRTQNGNNN AYCQDNEMSW FDWELLNENK DLLEFTKKLI NLRKTHFSFL RKHFFTGASK
INGTPSDITW FDYNAQKPNW NVPSNFLAFL IDGNKINLES DEDDNDFYVM TNSYNNDITV
RLPPPSSGGK IWHRLIDTSY TDGKDFLDEE HTEQIMNQQI YVVLSRTTVV LIAK
|
|---|
| |