Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE0053 |
Symbol | fliR |
ID | 2741668 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | + |
Start bp | 61733 |
End bp | 62527 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637158923 |
Product | flagellar biosynthetic protein FliR |
Protein accession | NP_970670 |
Protein GI | 42525572 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGCCCT TCGATTTTAT CCTAGATAAA GAACCCATTT TTTTACTCGC AGCTGTCCGC ATTTTTGCCA TACTGATGAC ATCCCCTCTA ATGTCAATGC GCAATGTTTC ACGAATTGCA AAGGTTGCTC TTGCAGGCTT AACTGCATTT ATGGTAACCC CCTATGCCTA TCCCAACTTC GGAAATCTAA ACGCCTTCAG TCTTGAGTAT CTTCTTTTAC TTCTTGGAGA AGGACTTATC GGTGTTTTAA CCGGTTTTTT TATAAGCATT TTATTTTCTA CATTCAGCAC GGCAGGACAG TTTTTTTCGT TCCAGATGGG CTTCGGGGCG TCGGGTGTTT TTGATGCCCT AGCTCAAGTT GAAAACCCCC TCGTAGGTCA ATATTTTAAC TTTATTGCAG TCCTTATCTT TTTACGCATA AACGGTTTCC AACGTCTTTT TTTAGGCGGA ATAATGAAGA GCATTGAGCA TGTAAACTGC TTTTTGTTTT TAGAAAGGCA GGAGGAGCTT TCAACTTATC TTTTAGGAGC AGTTGGAAAT CTTTTTTTAA ACGCAATGAT AATTGCCCTG CCTGTTATGG GAACACTAAT CTTAATTCAC ATAACAATGG GACTTTTAAC AAAGGCAGCC CCTCAGATGA ATTTGTTATC GGAAGGCTTC CCCATTACTA TTTTAACTGC CTTTTTTATT TTAGCCCTTG CTCTGCCTTT TTTTATAAAC ACCTTTGAAA TTATTTTGGA AAAAGGCTTT TCGGATTTCT GGCGGCTTTT AGACAGTTTA GGGGGTACTA AATGA
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Protein sequence | MQPFDFILDK EPIFLLAAVR IFAILMTSPL MSMRNVSRIA KVALAGLTAF MVTPYAYPNF GNLNAFSLEY LLLLLGEGLI GVLTGFFISI LFSTFSTAGQ FFSFQMGFGA SGVFDALAQV ENPLVGQYFN FIAVLIFLRI NGFQRLFLGG IMKSIEHVNC FLFLERQEEL STYLLGAVGN LFLNAMIIAL PVMGTLILIH ITMGLLTKAA PQMNLLSEGF PITILTAFFI LALALPFFIN TFEIILEKGF SDFWRLLDSL GGTK
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