Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE0043 |
Symbol | |
ID | 2741658 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | + |
Start bp | 49828 |
End bp | 51711 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637158913 |
Product | TPR domain-containing protein |
Protein accession | NP_970660 |
Protein GI | 42525562 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTAAGT CTGTAAATGC GCTTATAAAT GAAGCTATTG AAGCCGGAAA AAAACGCGAC TATAAGACTT CAATTTTAAT TTTAGAAAAC TTAGCCGCAG AGGGCTTAGC CGAAGTATCT TCTCCCTTTT ACGGCGAAAA AAAGGGAAAT CCCGAAATAT ATTTATACCT TTCAAGGGCT TGGGCTGCTG TAAACAATTA CGGCAGATCA ATAGCCTATG GTAAGGCCTA TATAAAAAGA TGCTCATCGG ACCCGTCTGC AAATAGTACA GACCTTCCTA TGGGTTTCTT TTTTTTGGGC CGCTCATATT TGGCCGCAGG GCAATATGAC AGGGCCGTTT ATTGTCTTGA AAAAAGCTTA AAGCTAAATC CCCATCCTCT TGAAACAAGG GCAATGCTCG GCTCGGCCTA TCTAAAATGG AAAAAGCCCC GTCTTGCCAG GGAAACCTTT GAAGAAGCCT TAAAGTTTGC TCCTTCGGAT GCAAAGCTGA ATGCCGGATA TTTAAATTCT CTTTTTGTTG AAGGAATTTA TGAATTAAGA AACGGCAACG CAGATATGGC TCGCCAAATG TTCAGCTTTG CAATAAAGAA CGGCATAGAC GGGGTTGCTC CTCGCCTATA TCTTGCTCAC GCCCTAAAAA TGGAGGGCTA TCTTCCGGAG GCCCTAGGCC AATACGAGGC CGCCTGCGAA TTCGAGCCCG ATGATCCCGC CCTAAAGTGG TACCCTGCAA TGATCAAGAT GCAGCTGGGC GATACAACCG CTGCTGCAGA AGATTTTGCA AAACTGGGTA TTGAGATTCC CGATGACGGA GTTTCGGATC GTTTTTTTGC AATGGGCGTT ATCAAAAAAC ATATGGAGCG GGGCGATTAC TCAAGAGCAG CCGTTGCCGC CCGCATCTTT ATTAAAACCT TTGGAAGCGA TGCCGAAATA CGCCTCCTCG CTGCAGAAGC CCAGCGTTCC ATGGGGAACA CCAACACAGC CTTGGGACAT TATAAGTGTG CACTTGAACA CGAGCCTGAA AATCCTTATC CGCATTACGG CATAATGCTT GCCCTTCAAG AAGCATACCG ATGGGAGGAA CTTAGTGCCG AAATCCTGCG GGCCGAAGCA AGCGGCGTCT GCGATGCGGA CGATATTTAT TATTATAAAA TAATTACCGC TGCCCATATC GATAATCCTC CCGAAGAGGT ATTGCCTCAT CTTCAAGCTC TTATTCAAAA CGGAAGATCC GATTCGGCTA TTTTTAATGC GATGGGCTGC TGCTACATAA AACTGAACAT GCCCGACCTT GCCCTAAACT GGTATGAAAG AGCTTTGAGC ATCAATGAAA AAGATGAAGA AGCTAAAATA GGAATTATCG CCTCTTACGA AAATTTACAA TTAAATAAGG AAGCTGATGA AGCATATAAC TCATATCTAA ATGAATGGGG AAAGAATATC TACATAAGGC GGGACTATGT ACTATTTTTA GAAAAATGCG AGCGTTGGGA AGATGCCGGC AATCAGCTTG AAATTTTAAT GAGTCAAGGC AAAAAAGTTA ATTTTGATCC TGAGCTTGCT TTATTCCGAA GAAAGGCAGG ACAATACCAA AAAGCCGCTA TTCTTTATAG AAAGATGCTT AGGGCTAAAC CGGAAGAAAG ACTCTTATTA CACAACCTCG TCTTCTGTCT TGATAAAATG GGACAAACAA AAGTCTCCCT CGATCTTTTA AAAGCTGCAG AAAAAATGTT CGGCATTAAG ACCGATTCCA TGCTCATCAA AGGCATCCTT CAAATGCGCC TAAAAAAGAA AGAAGATGCA ATAAAAACTT TTCAATACAT ATTGGAAAAA GAACCTAAAA ACAAACATGC TGCCGAATTC TTGGAAAAAG CTTACGGAAA ATAA
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Protein sequence | MAKSVNALIN EAIEAGKKRD YKTSILILEN LAAEGLAEVS SPFYGEKKGN PEIYLYLSRA WAAVNNYGRS IAYGKAYIKR CSSDPSANST DLPMGFFFLG RSYLAAGQYD RAVYCLEKSL KLNPHPLETR AMLGSAYLKW KKPRLARETF EEALKFAPSD AKLNAGYLNS LFVEGIYELR NGNADMARQM FSFAIKNGID GVAPRLYLAH ALKMEGYLPE ALGQYEAACE FEPDDPALKW YPAMIKMQLG DTTAAAEDFA KLGIEIPDDG VSDRFFAMGV IKKHMERGDY SRAAVAARIF IKTFGSDAEI RLLAAEAQRS MGNTNTALGH YKCALEHEPE NPYPHYGIML ALQEAYRWEE LSAEILRAEA SGVCDADDIY YYKIITAAHI DNPPEEVLPH LQALIQNGRS DSAIFNAMGC CYIKLNMPDL ALNWYERALS INEKDEEAKI GIIASYENLQ LNKEADEAYN SYLNEWGKNI YIRRDYVLFL EKCERWEDAG NQLEILMSQG KKVNFDPELA LFRRKAGQYQ KAAILYRKML RAKPEERLLL HNLVFCLDKM GQTKVSLDLL KAAEKMFGIK TDSMLIKGIL QMRLKKKEDA IKTFQYILEK EPKNKHAAEF LEKAYGK
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