Gene TDE0041 details

Gene Information

• Locus tag: TDE0041
• Symbol: birA
• ID: 2741656
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 47637
• End bp: 48695
• Gene Length: 1059 bp
• Protein Length: 352 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 637158911
• Product: birA bifunctional protein
• Protein accession: NP_970658
• Protein GI: 42525560
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0340] Biotin-(acetyl-CoA carboxylase) ligase
• TIGRFAM ID: [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region; [TIGR00122] BirA biotin operon repressor domain

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGAGAGC TTATATCAAG GACAACGAGT GATATACTTT TGGATATGCT TATAGAACAA 
AACGGAAGCC CTCTTTCGGG CGAAGAAGCG GCTTTGCACT TAGGCCTTTC GAGGGTTTCC 
GTCTGGAAGG CCGTGCAAAA ACTAAGGGAT GAAGGTTATG AAATTGAAGG CGGAAAAAAC 
AAGGGCTATA TTCTAAAATC CTCTTCAGAT GTGCTGAACG CCTTTTCAAT TGAAAAGAAC 
CTATCTGCCT TTGCTCAATC CGTTTGCAAG GGGAAGGTTG AAGTTTTTAA GACAATAGAT 
TCCACTAACA CCGAGGCAAA AAGGCGGTTA ACTTCCTCAA GCAGAGCCGA ATCCCTTCAC 
GGAACGGTTC TTTTTGCCGA GCATCAAAGC GCCGGGAGAG GCCGCTTTTC ACGCAGTTTT 
TATTCGCCAA AAGGAGCGGG TTTATATTTT AGTCTGATTT TTTGCCCCTC AATTCCGGCA 
AGGACCGAAA GGGAAGTGCC CTCTTCCGAT CTTTACACGG CAATTTCGGC AACGGTTATC 
TGCCGCTGCT TAAAGGCTCT GGGCTTTGCT CCGCAAATAA AGTGGGTAAA CGATATTTAT 
CTTAACGGAA AAAAAATCTG CGGCATTTTA AGCGAGGGAA TTATCGATAT GGAAACTTCC 
TCAGTGCAGG CCGTAATTAT AGGCATAGGC CTCAATGTAA AAGAGTCTAA TTTTCCTCCC 
GAACTTAAAA ACAAGGCCGG CTCTCTTTTT ACCGAAACAG GCTCATCTTT TAGCGAAGCT 
GAAGTTCCTT CCCTCAACCG GAATGTTTTA GCTTCTTCCA TTATGTCGAG CCTGATTGAA 
GCTCTCTACG GTCTACATTC TCAAAAAAAC TTAATGGAAG AATATAAAAA CCTCTCCCTC 
CTTACGGGAA AAAAGGTAAG AGTTCTTCCC TTTGCCGGCA TCCCCTATCA AGCCTTGGTT 
TTGGGAATCA GCGATTTAGG ACATCTTATC ATAGAAACCG ATGACGGCAA AAAAGAAGAG 
TTGATTTCAG GCGAGGTTAG TTTGGAGCTT GAACCTTAA 

 

Protein sequence

MGELISRTTS DILLDMLIEQ NGSPLSGEEA ALHLGLSRVS VWKAVQKLRD EGYEIEGGKN 
KGYILKSSSD VLNAFSIEKN LSAFAQSVCK GKVEVFKTID STNTEAKRRL TSSSRAESLH 
GTVLFAEHQS AGRGRFSRSF YSPKGAGLYF SLIFCPSIPA RTEREVPSSD LYTAISATVI 
CRCLKALGFA PQIKWVNDIY LNGKKICGIL SEGIIDMETS SVQAVIIGIG LNVKESNFPP 
ELKNKAGSLF TETGSSFSEA EVPSLNRNVL ASSIMSSLIE ALYGLHSQKN LMEEYKNLSL 
LTGKKVRVLP FAGIPYQALV LGISDLGHLI IETDDGKKEE LISGEVSLEL EP