Gene TDE0033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE0033 
Symbol 
ID2741648 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand
Start bp40067 
End bp40786 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content35% 
IMG OID637158903 
ProductDNA-binding response regulator 
Protein accessionNP_970650 
Protein GI42525552 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3279] Response regulator of the LytR/AlgR family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00150761 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTAAAA TAGCCGTCAT CGAAGATAAT GAAGTTCAAT CCAGACTCCT AAAGGACTAT 
GCAAACGAAT GGGCAAATAA AAATAATCTT TTGCCGGAAA TTAAACTTTT TTCTTCAGGC
GAACAGTTTT GGTTTGAATT TGAAGAGCTT TCCGATATAG ATATAATCTT ATTGGATATA
CAGATGTCTA GGATAAGCGG TATCGAACTT GCCAAAAAAA TAAGAAAAAC AAAAAGCGAT
GCCGTTATCA TCTTTATAAC AGGTATACCC GACTATATGC AGGAAGGCTA CGATGTCGAA
GCCTTGCACT ATCTTTTAAA GCCTGTAAAA AAAGAAAAAC TTTTTGATTG CTTGGATCGA
GCCTTAAAAA AGCAGGATAA AGTTAAAGAA GAAAATTTTG TCTTTTCATG CGAAGGCCGC
CTTACAACAT TAAAGCAATC TGAAATTGTT TTTATAGAAT CTATTTCGCA TAATCTAAAA
ATAAAAACTT TAAAAAGCGA GTACATAACA AGGATGAATT TATCGGAGGC GGAAGAAAAG
CTAAATTCCA AACTATTTGT AAAAACTCAC AGAGCCTTTA TCGCAAACCT GATGCACATA
AGGCAGCTTC AAAAAGACAA GGCCGTCCTT GCAGATAATA CTTTAATTCC GATAAGCCGC
AGGGAATATA AAAATGTCAA CACTCTTTTT ATCGGCTTTT TTACCCAAGG AGAAACCTGA
 
Protein sequence
MLKIAVIEDN EVQSRLLKDY ANEWANKNNL LPEIKLFSSG EQFWFEFEEL SDIDIILLDI 
QMSRISGIEL AKKIRKTKSD AVIIFITGIP DYMQEGYDVE ALHYLLKPVK KEKLFDCLDR
ALKKQDKVKE ENFVFSCEGR LTTLKQSEIV FIESISHNLK IKTLKSEYIT RMNLSEAEEK
LNSKLFVKTH RAFIANLMHI RQLQKDKAVL ADNTLIPISR REYKNVNTLF IGFFTQGET