Gene TDE0028 details

Gene Information

• Locus tag: TDE0028
• ID: 2741643
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 34146
• End bp: 36020
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 637158898
• Product: ABC transporter ATP-binding protein
• Protein accession: NP_970645
• Protein GI: 42525547
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.716088
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTATTGG AAAAAAAAAG GCACACAACA AAAGAAATTA TTTCTACATT TTTTAAGTCG 
ATTAAGTTTT TAAATACTTT GGATAAGGGG CTTTGCTTTA ATTATGCATT GATAGGTATC 
GTAACAGGCT TGCGTCCCTT TGTGAATATC TACATGCTTA AAAAGATTAT AAACGCTCTC 
TCACAGGGTT TACCTAAAGA GCACTTATTT TTGCTTGCAG GAATAAGCAT TGCAATAAAT 
TTATTATTAT TCTTATGCGA AAAATTTATA GGGCACAATT CCTATTTTAG AATGGAAAAT 
TTAACGCAGC TTCGAAATAT GGAAATAGCA AAAAAGAATA CCACAATGGA TTATGAATTT 
ATCGAAGATG CCGAACTCCA AATCGAAATG GAAAAAATGT ATAATATGGA TTATAACGGA 
GGCTTCGGCT TATTTTCACA GCTTATGAAT ATTCATAATC TTAGCCAAAA TATTGTGTTG 
TTTATCATCG GCTTAATTCT TTCAATTCCA ATGTATACAT CTTATGCTCC GATTTTAGGA 
ATACCTTTAT GGATTCAAAA CAGTATTTTC ACTTTCTTTA TTATTTTGAT ATCCGTTTTA 
AGTATAAGAA TAAATAAAAG GGCTTTGGAA AAAAGAGATG CATTTATGAA AAACAATCTC 
TTTGAAGAAA TGAGACCTTA CAGCTATGCC GTAAGTCTTG CTCCGGAATA CAAAATAGGA 
AAAGATATCC GGCTGTACAA CAAAAAATTA TATAATGAAT ATTTTACAGG CTCAAGCGAT 
TTTCAAATAA AAATAGTAAA CGCATTTTTA AGATTCAGCC TTTTTCCACA GCTTGCTCAA 
ATCTTTTTTA ACATGTTCAG TTTAGGTTTA ATCTATATCT TTGTGGGAAT AAAGGCCTAT 
TACGGAGCAA TTCAGATAGG AGACATAATT CAATATTCGG GAGCCGTTAC TCAATTTGTT 
TTTGCGGTTG CAGGTCTTAC AAGAGCTTAT AATCAAATTG CAGCAAACTG TGATTTCTTC 
GATCTTTGTT TAGGCTATAT CAACTTAAAA GAAACAAAAT ACAAGGGAAG TCTTCCTATC 
GAAAAAAGAG ATGACAACGA ATATGATTTT GAATTTAAAA ATGTAAGTTT TAAATATCCT 
CAAAGCGAAA AATATGCATT AAAAAATGTC AACCTAAAAT TCAGGATAGG AAAAAAACTT 
GCAATAGTCG GCATGAACGG AAGCGGTAAA ACAACTCTGG TAAAATTATT AACCCGCCTC 
TATGATCCGA GTGAGGGCGA AATTTTACTT AACGGTATTG ATATTAAAAA ATTCGATTAC 
GATGAGTATC TGGATATTTT TTCGGTTGTC TTCCAAGATT TTAATCTTTT TGCTTTAAAC 
ATTGCCCAAA ATGTAGCCTC TTCGGCAGAT TACGATAAAA CAAAAGTAGA AGAAGCCTTA 
AACCTTTCAG GTTTTTCCGA TTCGCTTAAA AAAATGCCTC AAGGCATCGA AACATACCTC 
TACAATGATT TTGAAAAGGG CGGAATCGAA ATATCGGGCG GTGAAGCTCA AAAGATTGCG 
ATGGCAAGGG CTATTTACAA GGACTCTCCC TTTATAATAC TAGATGAACC GACCGCAGCT 
CTCGATCCGA TTTCCGAATT TGAAATTTAT TCAAAGTTTG ATACAATTAT AGGGAATAAA 
ACAGCCGTTT ATATTTCGCA CCGTCTTTCT TCATGTAAAT TTTGTAATGA AATTGCAGTC 
TTTGATGAAG GCAAGTTAGT ACAGCACGGT TCTCACGATG CTCTTCTTCA AGAGAAAAGT 
GGAAAATACC ACGAGCTATG GAATGCCCAA GCTCAGTACT ATAAGGAAGA GGAAATTGAA 
AAGCTTTTAA TATAA 

 

Protein sequence

MLLEKKRHTT KEIISTFFKS IKFLNTLDKG LCFNYALIGI VTGLRPFVNI YMLKKIINAL 
SQGLPKEHLF LLAGISIAIN LLLFLCEKFI GHNSYFRMEN LTQLRNMEIA KKNTTMDYEF 
IEDAELQIEM EKMYNMDYNG GFGLFSQLMN IHNLSQNIVL FIIGLILSIP MYTSYAPILG 
IPLWIQNSIF TFFIILISVL SIRINKRALE KRDAFMKNNL FEEMRPYSYA VSLAPEYKIG 
KDIRLYNKKL YNEYFTGSSD FQIKIVNAFL RFSLFPQLAQ IFFNMFSLGL IYIFVGIKAY 
YGAIQIGDII QYSGAVTQFV FAVAGLTRAY NQIAANCDFF DLCLGYINLK ETKYKGSLPI 
EKRDDNEYDF EFKNVSFKYP QSEKYALKNV NLKFRIGKKL AIVGMNGSGK TTLVKLLTRL 
YDPSEGEILL NGIDIKKFDY DEYLDIFSVV FQDFNLFALN IAQNVASSAD YDKTKVEEAL 
NLSGFSDSLK KMPQGIETYL YNDFEKGGIE ISGGEAQKIA MARAIYKDSP FIILDEPTAA 
LDPISEFEIY SKFDTIIGNK TAVYISHRLS SCKFCNEIAV FDEGKLVQHG SHDALLQEKS 
GKYHELWNAQ AQYYKEEEIE KLLI