| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG2016 |
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| Symbol | cas3 |
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| ID | 2553085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Porphyromonas gingivalis W83 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002950 |
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| Strand | - |
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| Start bp | 2106124 |
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| End bp | 2108460 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637150594 |
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| Product | CRISPR-associated helicase Cas3 |
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| Protein accession | NP_906084 |
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| Protein GI | 34541605 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1203] Predicted helicases |
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| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3
[TIGR01596] CRISPR-associated endonuclease Cas3-HD |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.580429 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCAGAACA ACAAGATGAT CAATAAAGAA TCGCCGATTT TAGCAAAGCC CTCCGGGATT
ACGTTGGACG TTCATGCCGA AAACGTAATT CAAGAGGGCG CATTGCTACT AAAAGGTCTT
GGTTGCACAA AAGAAAAATA CTTCCAAACC ACTGCCAAAC AGATTGTGCA GCGAGTGGAG
TTAGCTTGTA AATACCATGA CATAGGAAAA AGAAATAAGA TATGGCAAGA TGCTTGTAAA
AAAGACTATA AGGCATATCT TATTTGGAAG AAAATTCATC CAAATAAATC TTTTGAAGAT
TACACTATAG AATGTAGAGA AGAGGCCGGT AAATTTTTAC GACAAACACA TGTGCGACAT
GAATTTTATT CAATAAAAGG GCTTCTCAAT AACAACCCTC CACCCAATAA CAACCCTCCA
TACTGGCTGA AGATTGCGAT CGCTGCACAT CATCGTAAGC TAAGCATGAA GCATGAAGAA
CGATGGCTAA GCAGTGATGA AGATATTTGC TCTGTGTGGA AGGATATCAG AAGATTGTCA
AATTATTTCT TTGATGATCG GAATAGCGTT CTGTCCGATA TTGCAATCAA GCAATATGAA
TTTGCAGGAC CACGAAGCTT ACTTCAATTA GCGGATCACA GAGCGAGTGC AAAGGAAGAG
TCAAAATGCA TCCCGGATCC GATTGCTTTT TCTTATACCT TTCCTGAAAA GTGGGAAAAA
AGACCTGTTC AAAAGCTGGT AGAAAAGCAT TGGAGAGACG AACTTCTTTT AGTACGAGCA
CCCACTGGTG CTGGAAAAAC GGATGCAGCA CTCTTGTGGG CTTCTCATCA AATCAAACAC
AGAAAAGCAG ACCGCTTGAT TATTGCTATG CCCACTCGTT TTACAACAAA TGCACTAGCT
CTAAGCGTAT CTTCGACCCT TTCTTCTACA GGCCTGTATC ATTCCAGTGC ATGGACACAG
AATTTCAGTA GCAAAATAGA CAACGGGGAA ATAGCTTTAG AGCAGGCAAG ATACTATCAT
AACCAAGCTC GCTTACTACA GACCCCTATA ACGGTATGCA CCATAGATCA TCTCCTCTCT
TCATTGACTC TTTGTGACGA GGAACATCAG ACCATTACTT TTGCACTGGC AAATGCATGT
CTCGTTATTG ATGAGGCAGA TTTCTATGAT CAATTTACAC AAGCTAATAT ATTAGTATTA
CTAGAGGTTC TAAAATATTG GAAAGTGCCG ATATTGCTGA TGAGTGCCTC ATTGCCAGAC
AATATAGTAC AAGAATATCG AAAGATTGGT TATGATATTA AACACATACT TGAAGACACG
TCAGACATAG AGAGAGCACG TTTTTCTTTA ATAGAGAAAC GTGATGTTTC AGAAATAAGT
CAGATGCAAG ACTTATTACA ATTATGCCTT GATAGAGGTA GTGCGATTAT TTTCGCAAAT
ACTGTCGATA GAGCACAAGC ATACTATCAA TGGTTTTTGG AGAACGGTCA TGAAGAAGAA
GTAATACTTT ATCATAGTAG GTATACTGAA ACAGATAAAA TTGAAAAGGA AGCACAATTG
CTTCTTAGAT TAGGGAGAAG CGCTTGGGAT AATGATCGAG CAAATGGGGT TGCCATATTG
ACACAGATTG GAGAAATGAG TGTGAATATC AGTGCAGATA TAATGATTTC TGATCTTTGT
CCTATTGATC GATTGACCCA AAGATGCGGT CGTTTGTGTC GGTTTTCGAG AAAGATTGGA
GACTTATATA TAATCAGGCC TATGCGCGAG GGAAATTTAT TTCCAGCCCC TTATTATCAA
AATGTCGGCC CATCACAAAA ATTAGAGCCA AATGATGCAT TAATCCAAAC AGATGAACTA
TTGGAAAAAG GGATGTATTC TGCAGCTAAT TTAGTTCAAT TGCTAAACAA AGTATATGCT
AATCAGACAG TATTCTCCAC AGAAGCGAGC CGTAATGCGG ATCGCTTGAG AGAGATGTTC
AAAGCGAATT GGTTGATAAA TCCAATAGAG TACCTTGATG AAGAAATAGG TTCTACAAAT
TTTTGGCGAG CTCGAAACAT AATGCCACGA TGTAGAATAT ACATAAAAAG GCCATTACAA
TCTTTTCGGA ATTACTCGGA TTTTAGAAGA TGGGAAACAG ATGTAGCGAT AGATATCCCT
ATTTATGTCA TTAAAAAAGC TATGCGTATG AGCGATACCG TTTGCTCTCA AGTAAAAGTG
TGTATTGGCA AAAATGATTA TACATTGATT GTAATAAATG CCAAATGCTA CAATAATGTT
AGAGGACTGT TTTTCTCTGA ATCAGTCCTC GAAGAACCTA ACTTTGAGTT CTTGTAA
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| Protein sequence | MQNNKMINKE SPILAKPSGI TLDVHAENVI QEGALLLKGL GCTKEKYFQT TAKQIVQRVE
LACKYHDIGK RNKIWQDACK KDYKAYLIWK KIHPNKSFED YTIECREEAG KFLRQTHVRH
EFYSIKGLLN NNPPPNNNPP YWLKIAIAAH HRKLSMKHEE RWLSSDEDIC SVWKDIRRLS
NYFFDDRNSV LSDIAIKQYE FAGPRSLLQL ADHRASAKEE SKCIPDPIAF SYTFPEKWEK
RPVQKLVEKH WRDELLLVRA PTGAGKTDAA LLWASHQIKH RKADRLIIAM PTRFTTNALA
LSVSSTLSST GLYHSSAWTQ NFSSKIDNGE IALEQARYYH NQARLLQTPI TVCTIDHLLS
SLTLCDEEHQ TITFALANAC LVIDEADFYD QFTQANILVL LEVLKYWKVP ILLMSASLPD
NIVQEYRKIG YDIKHILEDT SDIERARFSL IEKRDVSEIS QMQDLLQLCL DRGSAIIFAN
TVDRAQAYYQ WFLENGHEEE VILYHSRYTE TDKIEKEAQL LLRLGRSAWD NDRANGVAIL
TQIGEMSVNI SADIMISDLC PIDRLTQRCG RLCRFSRKIG DLYIIRPMRE GNLFPAPYYQ
NVGPSQKLEP NDALIQTDEL LEKGMYSAAN LVQLLNKVYA NQTVFSTEAS RNADRLREMF
KANWLINPIE YLDEEIGSTN FWRARNIMPR CRIYIKRPLQ SFRNYSDFRR WETDVAIDIP
IYVIKKAMRM SDTVCSQVKV CIGKNDYTLI VINAKCYNNV RGLFFSESVL EEPNFEFL
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