| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG1743 |
|---|
| Symbol | kdsA |
|---|
| ID | 2551463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Porphyromonas gingivalis W83 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002950 |
|---|
| Strand | - |
|---|
| Start bp | 1827620 |
|---|
| End bp | 1828438 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637150355 |
|---|
| Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
|---|
| Protein accession | NP_905848 |
|---|
| Protein GI | 34541369 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAACT CCAACTCCTT ATACGAGAGA CTACAGACAG CGGACTCATT CTTCCTGATG
GCCGGCCCCT GTGCCATAGA GAGCGAAGAT ATGGCACTGC GCATTGCAGA GCGAATAGTA
GAGGTGACTT CCCGACTGGG CATTCCGTAT ATATTCAAGG GATCGTACCG CAAGGCCAAC
CGCTCGCGTA TAGATTCCTT CACCGGCATA GGCGACGAAA AGGCACTTCG CATTCTGGGC
AAGGTAGGCC GGGAGTTCGG TGTCCCGACG GTGACGGACA TACATGAGAC ACACGAAGCG
GCTATGGCTG CCGAGTACGT GGATGTACTC CAGATACCGG CTTTCCTCTG CCGGCAGACG
GATCTGATCG TGGCGGCAGC CTACACCGGG CGAATCGTCA ATGTGAAGAA AGGGCAGTTC
CTCTCGGGCG AAGCCATGGC TTTCGTGGCA CGAAAGTGCG TGGACAGCGG CAACAGCCAA
GTGATTCTGA CCGAGCGTGG CAATACCTTC GGCTACACGG ATTTGGTGGT GGACTACCGG
AATATTCCGG CAATGCGTTC GCTGGGCTTT CCCGTAGTAA TGGACGTGAC TCACTCCCTC
CAGCAACCCA ATCAGGGTAG TGGCGTGACG GGGGGAAAAC CCGAACTGAT AGAGACCATC
GCGAAGGCTG CCATAGCCGT AGGTGCGGAC GGGCTTTTCA TCGAAACGCA TCCCGATCCT
GCTTCGGCCA AAAGCGATGG AGCCAACATG CTCCGACTGG ATTTGCTCGA AGGGCTGCTC
ACGAAGCTGA TGCGCATACG GGCAGCGATC AGGGATTGA
|
|---|
| Protein sequence | MTNSNSLYER LQTADSFFLM AGPCAIESED MALRIAERIV EVTSRLGIPY IFKGSYRKAN
RSRIDSFTGI GDEKALRILG KVGREFGVPT VTDIHETHEA AMAAEYVDVL QIPAFLCRQT
DLIVAAAYTG RIVNVKKGQF LSGEAMAFVA RKCVDSGNSQ VILTERGNTF GYTDLVVDYR
NIPAMRSLGF PVVMDVTHSL QQPNQGSGVT GGKPELIETI AKAAIAVGAD GLFIETHPDP
ASAKSDGANM LRLDLLEGLL TKLMRIRAAI RD
|
|---|
| |