Gene PG1660 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPG1660 
Symbol 
ID2552666 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePorphyromonas gingivalis W83 
KingdomBacteria 
Replicon accessionNC_002950 
Strand
Start bp1743834 
End bp1744358 
Gene Length525 bp 
Protein Length174 aa 
Translation table11 
GC content54% 
IMG OID637150280 
ProductECF subfamily RNA polymerase sigma factor 
Protein accessionNP_905780 
Protein GI34541301 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.379101 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGAAGC AATCCGACAG CTACTATATC AGTGCCGTGC AGGCGGGCGA TACCGAAAGT 
TTCGCCCCTT TGGTGGAGCG ATACAGCGAC ATGCTGTATG CTCTCCTCTG TCGGCTGCTA
CAGGACGAAG AGGATGCGGC CGATCTGCTG CAAGACACCT TCGTAAAGGC TTTCAGGCAT
ATCAGCCGAT TCGACGGTCG GAGTTCGTTC TCCACATGGA TCTACCGAAT CGCCTATAAT
GAGGCGATAG ACCATCTTCG TCGCCACAAG GCCTATGTAA CCGATCGGGT AGAGGAGCTA
CCCGATGTGC CGGACGAAGA TCTCGAACCG TCCGGAGAGG ATCCGGAGCT GCTGCAGCAA
GCATTGGATT CGCTGCCGGC TGCCGACAAA GCCTTGCTGC TCATGTTCTA TTCGGATGAC
TTGTCGGTTC GGGATATAGC GGAAGTGACC GGTATGTCGG AGTCCAACGT GAAGGTCAAG
CTCCACCGAC TTCGCACCAA ACTCTATAAA ATGATGAGAA AATGA
 
Protein sequence
MEKQSDSYYI SAVQAGDTES FAPLVERYSD MLYALLCRLL QDEEDAADLL QDTFVKAFRH 
ISRFDGRSSF STWIYRIAYN EAIDHLRRHK AYVTDRVEEL PDVPDEDLEP SGEDPELLQQ
ALDSLPAADK ALLLMFYSDD LSVRDIAEVT GMSESNVKVK LHRLRTKLYK MMRK