Gene PG1562 details

Gene Information

• Locus tag: PG1562
• Symbol: rfbC
• ID: 2552991
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Porphyromonas gingivalis W83
• Kingdom: Bacteria
• Replicon accession: NC_002950
• Strand: -
• Start bp: 1641082
• End bp: 1641672
• Gene Length: 591 bp
• Protein Length: 196 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637150196
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: NP_905697
• Protein GI: 34541218
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 35
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACTTTA TCCCCACCGA AATACCCGAA GTTGTTATCC TTGAGCCGCG ATTGTTCCGT 
GACGATCGAG GCTATTTCTT CGAATCATTC AGTCGCCAAG AGATAGAAAC GGGTATTCGC 
CCCATTAATT TTGTACAAGA CAACGAATCG GCATCCCGAT ATGGTGTACT AAGAGGGCTT 
CACTTTCAGA AACCTCCTCA TGCCCAGAGC AAGCTGGTAC GAGTAGTACG TGGGTGTGTG 
ATTGACTATG CCGTGGATAT TCGCTTTGGA TCGCCTACTT TCGGCAAATA TGTAGCAGTG 
GAGCTTTCCG ATACGAACTT CAGACAGTTG TTTATCCCGC GCGGATTCGC TCACGGTTTT 
GTCGTGCTAA GTGACGAAGT CGTATTTCAG TACAAATGCG ACAACTACTA TGCTCCACAA 
AGCGAAGGAG CCATTGCCTG GAATGATCCG AACTTAGATA TTGAGTGGAA AATCCCTGCA 
GAGGACATTA TCCTCTCAGC TAAAGATCAG GCCAATCCGT CATGGACGGA ATTGATATCG 
AGCGAGGATT TCCGGAATCT CTTCCCCTAC AATCAAGACT TATACGAATG A 

 

Protein sequence

MNFIPTEIPE VVILEPRLFR DDRGYFFESF SRQEIETGIR PINFVQDNES ASRYGVLRGL 
HFQKPPHAQS KLVRVVRGCV IDYAVDIRFG SPTFGKYVAV ELSDTNFRQL FIPRGFAHGF 
VVLSDEVVFQ YKCDNYYAPQ SEGAIAWNDP NLDIEWKIPA EDIILSAKDQ ANPSWTELIS 
SEDFRNLFPY NQDLYE