Gene PG1560 details

Gene Information

• Locus tag: PG1560
• Symbol: rfbB
• ID: 2553005
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Porphyromonas gingivalis W83
• Kingdom: Bacteria
• Replicon accession: NC_002950
• Strand: -
• Start bp: 1639157
• End bp: 1640221
• Gene Length: 1065 bp
• Protein Length: 354 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637150194
• Product: dTDP-glucose 4,6-dehydratase
• Protein accession: NP_905695
• Protein GI: 34541216
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1088] dTDP-D-glucose 4,6-dehydratase
• TIGRFAM ID: [TIGR01181] dTDP-glucose 4,6-dehydratase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 34
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACTTCC GACGTCATAT TCTCATCACC GGCGGTGCCG GTTTTATCGG ATCGCATGTG 
GTACGACTCA TGGTCAATGC TTATCCTGAT TATGAGATCA TCAATCTCGA TACGCTGACA 
TATGCCGGCA ATCTGGCCAA TCTCAAGGAT ATAGAGTCCA AGCCGAACTA TCGTTTCGTA 
AAGGCGGATA TTTGCAATGC CAATACGCTG AAGAAAGTCT TTGCTCATTA TGCCATCGAC 
GGAGTCATTC ATCTGGCGGC CGAAAGTCAT GTGGATCGGT CTATAAAAGA TCCTTTAGCT 
TTTGCCCGCA CCAACGTAAT GGGGACGCTG ACGCTCCTGC AAACGGCCAA AGAGGCTTGG 
CATGGGGAAT ACGAAGGCAA GCGTTTCTAC CACATATCGA CCGATGAGGT ATATGGAGCA 
TTGGCTTTCG ACGGTACGCT GTTTACGGAA GAAACCAAAT ACGACCCACA TTCTCCCTAT 
TCGGCCAGCA AGGCTTCCAG CGACCATTTT GTCCGGGCTT ATCACGATAC TTTCGGTCTG 
CCGACAGTGA TCTCCAACTG CTCGAACAAC TATGGGCCCT ATCAATTCCC GGAGAAACTC 
ATTCCTCTCT TCATTAACAA TATCCGGCAC AATAAGCCTC TACCCGTCTA TGGGAAAGGG 
GAGAACGTCC GTGACTGGCT CTATGTCGAA GACCATGCTC GTGCCATCGA TCTGATATTC 
CATCGGGGCA AGAATGGCGA TACCTATAAT ATCGGTGGCT TTAACGAATG GAAGAACATC 
GATCTCATCA AGGTGATGAT CCGCGTGGTG GATCGTCTTT TGGGCAGAGA GGAAGGCTCT 
TCGGAGAAGC TGATCACCTA TGTGGCAGAC AGAGCCGGAC ACGATCTGCG CTATGCCATC 
GACTCGACTA AGCTGAAAAA CGAACTGGGC TGGGAACCCT CTCTCCAATT CGAAGAAGGC 
ATCGAGAAAA CCGTCCGCTG GTATCTTCAC AATCAAGACT GGCTGGATCG GGTGACCAGC 
GGCGACTACC TCCGATACTA CGACGAGATG TACTCCGAAC GATAG 

 

Protein sequence

MNFRRHILIT GGAGFIGSHV VRLMVNAYPD YEIINLDTLT YAGNLANLKD IESKPNYRFV 
KADICNANTL KKVFAHYAID GVIHLAAESH VDRSIKDPLA FARTNVMGTL TLLQTAKEAW 
HGEYEGKRFY HISTDEVYGA LAFDGTLFTE ETKYDPHSPY SASKASSDHF VRAYHDTFGL 
PTVISNCSNN YGPYQFPEKL IPLFINNIRH NKPLPVYGKG ENVRDWLYVE DHARAIDLIF 
HRGKNGDTYN IGGFNEWKNI DLIKVMIRVV DRLLGREEGS SEKLITYVAD RAGHDLRYAI 
DSTKLKNELG WEPSLQFEEG IEKTVRWYLH NQDWLDRVTS GDYLRYYDEM YSER