| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG1524 |
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| Symbol | menD |
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| ID | 2553091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Porphyromonas gingivalis W83 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002950 |
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| Strand | - |
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| Start bp | 1601103 |
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| End bp | 1602836 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637150163 |
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| Product | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase |
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| Protein accession | NP_905665 |
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| Protein GI | 34541186 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
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| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000332199 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATTCGG ATTATTCGGA TAAGAAAGGC GTAAGCGTAT TGATGGATTT ATTCGAGATG
AAGGGCATAC GTAAACTCGT TATGTCGCCC GGTTCGCGAA ATGCTCCTCT TCTGTTTTCT
TTCTCCCGGA ATCCCGCTTT CGAGAAATAC GTGATTGCGG ATGAGCGTTC CGCCGGTTTT
TTCGCTCTCG GATTGGCTTT GGCCTCGGGT GAAGCCGTAG GATTGGTTTG TACTTCCGGT
ACGGCCATGT TGAATTATGC TCCTGCCGTT GCCGAGGCTT TTTACAGGGG GATTCCTTTG
GTCGCGGTAA CGGCCGACCG TCCGGCCGAA TGGATCGACC AGGACGAGGG ACAGACGATT
CGACAGGAGG GAGCTATGGC CGGTTTCGTT AAGTCGTATT GCAGCTTGAG AGCGGAATTC
GATACTTCCG CCTCGGCATG GTATGCCAAT CGCCGTTTGA ATGAGGTGTT GAACCATGCC
CTGATGCCCC GGCGAGGACC CGTACACATC AATATGTCGT TTTGCGAACC GCTATACGGG
ACTTCCTCCG GATATTCCGG AAAAGAGCGG GCGATAACGT TCGTGAGGGA ACGGCAAGAA
TTGCCGGAAG AGGTATGGGA TATGCTCGTA AAGCGGTTTT TGGAAGCTCC CAGAGTGATG
ATCGTCGCCG GTTTTTATCC TCCCGACGAA GACGTGTCCG CCGCATTGCA GGATATATGC
AAATTTCCCC ATACGGTTTT GTTTGCCGAG AGTCTCTCCA ATATCCGTAC GGATACGGGG
ATATGTACGG CAGACCGGGT ATTGGCTGCA GCCGGAGAAG ACGAATCGCT TTATCCGGAA
CTCCTTATTT CTTTCGGAGG CTCGTTGATT TCCCGTATGT TGAAAACTTT TCTACGGAGG
GCGAAACCTG CGGAGCATTG GGGGATAGAC GAGAGGTTTC CGGCTCCGGA CACTTTCTGT
GCGCTTACCC ATCATATATG TACGGGAGCT TCGGGCTTTT GGAAGGAATT CGCCGGACGG
TTGAAAGACA AGGCACCGGA GTCCCTTTCA CCGGAAGGAA TTTCCTATGC CGGTTCGTGG
CAGAAGATAA AACGGAAGGC GGACCTCCTG CACCGTACCT TTATGGCGGA TGCGGGGTGG
AGCGACCTCA AGGCTTTCGA AGTGATTTTA AGGCATATTC CCCATGATGC TGCTTTGCAT
GCGGCTAATT CCACGCCCGT ACGTTATCTC CAATTATTCG AACACGCGCA TTATGCGGGA
GGAGAATGGA GCAATCGCGG AACCAACGGA ATCGAGGGGG CCACTTCCAC GGCAATGGGG
TTTTCCGAAG TATATTCCGG AACCACCCTT TTGATTACGG GAGATCTGAG TTTTATGTAC
GATTCCAATG CTTTGTGGAT GCCTTATGTA AACGGGCGGA TACGGGTAAT CGTGATGCGT
AACGGAGGAG GGGGGATATT CCGTTTTATT CCCGGGCCGG ATTCTTTGAA GGAATTGGAG
ACCTGTTTCG AGACTCCGCT CGAAGTTCCC GTAAGGGAAA TGGCCGGAGC TTACGGATGG
AGATATATGA AGGCCGTTTC CGCCGAAGAA CTGGAAACGG TGTTGCCTTC GTTTTTCGCA
TCCGGCGACA GGGCGGTCCT GCTCGAGGTG GAAACGCCGA GGTTTGAAAA CGCCCCTGTA
TTGAAATCGT ATTTTACATA TATTTCGGGG GAGTCTTACC CCGTAAACCG ATAG
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| Protein sequence | MDSDYSDKKG VSVLMDLFEM KGIRKLVMSP GSRNAPLLFS FSRNPAFEKY VIADERSAGF
FALGLALASG EAVGLVCTSG TAMLNYAPAV AEAFYRGIPL VAVTADRPAE WIDQDEGQTI
RQEGAMAGFV KSYCSLRAEF DTSASAWYAN RRLNEVLNHA LMPRRGPVHI NMSFCEPLYG
TSSGYSGKER AITFVRERQE LPEEVWDMLV KRFLEAPRVM IVAGFYPPDE DVSAALQDIC
KFPHTVLFAE SLSNIRTDTG ICTADRVLAA AGEDESLYPE LLISFGGSLI SRMLKTFLRR
AKPAEHWGID ERFPAPDTFC ALTHHICTGA SGFWKEFAGR LKDKAPESLS PEGISYAGSW
QKIKRKADLL HRTFMADAGW SDLKAFEVIL RHIPHDAALH AANSTPVRYL QLFEHAHYAG
GEWSNRGTNG IEGATSTAMG FSEVYSGTTL LITGDLSFMY DSNALWMPYV NGRIRVIVMR
NGGGGIFRFI PGPDSLKELE TCFETPLEVP VREMAGAYGW RYMKAVSAEE LETVLPSFFA
SGDRAVLLEV ETPRFENAPV LKSYFTYISG ESYPVNR
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