| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG0954 |
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| Symbol | |
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| ID | 2552977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Porphyromonas gingivalis W83 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002950 |
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| Strand | + |
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| Start bp | 1013326 |
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| End bp | 1015065 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637149668 |
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| Product | TPR domain-containing protein |
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| Protein accession | NP_905185 |
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| Protein GI | 34540706 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02996] repeat-companion domain TIGR02996 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.178394 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGATCC ATTCTATCAT TCTCCTGCTG TTTCTTTTAG TTATTTCTCC TGTAGCCGGA
AGTATATCCA TTACAGACAG TACAGCATCT AAGTTCGACC GATATTTCTA TGAAGGTGTC
CGGCAGCGAG AACAGGAGAA TTATGCTGCA GCTTTCGACA TCTTTCGCTA TTGCCATCGG
TTGAATCCCA ACGATGCGGC TCTGTTATCG GAGTTGGGAA AACTGTATAT TGCCATTGGG
CGTCAGGAGG AAGGAACCCG GTATTTGGAA CAAGCCTATC GGCTCTATCC CGACAACAAG
AACTATGGCA ATATATTAGG TGCTGTGTAT GAACGCCAGG GACGAGCTGA CGATGCTGTC
AGGCTTTATG AGGAGATGTC CGAACAGTTC CCTTCCGAGG ATGAACTTCG GTTCAAACTG
GCCAATATGT ACGTACAGGC CGGAGAGATA GACAAGGCCA TATACATATA CAACCGTATG
GAGGCACAAA ATGCTGTCAA TGCAGCAGAT GCCTCCAACT ATGCTGAGAT TCGGGCACGT
CTCTACCTGA TGACCGGTCA GACCAACAAG GCTCTGAACG AACTTCGCCG TCTATGCAAT
CGATTCCCGG AAGTGAATGA GTTTAGGCTG AAGTATGCCG GCACTCTGCT CGACAGTGAG
AAGTACGACG AAGCCTACGA GCAACTGCAA CTGATAGCTC GGACGGATTC GACAAGTGGC
TTGTATCATT TTGCTATGGC CAGCTATTAC TTGGGAACGA ACGAAAAAGA AGCTGCCATC
AACGAAATGA TCAAAGTAGC CGCTGACAAG GATGTGGCAC CGGAGCAGAA ACTACCGATC
ATCCTGCGCT TTATCGGTAC CGACACAGAC GAAGAGGATG CACCGAAAAA AGAGTATAAT
ATCCTGCTTG AAAAGATACT TGCCAGCCAT CCCACTGAGG TGGATGCACG CCTTTTCTAT
GCCGAGCTCT TGGAAATGCA GGGTGATTCT ATCCATGCCA TGGAGGTTTG CCGACCTATC
ACGGAGTTTG CTCCTAAAGA AGAACGGGCA TGGAAATTCA TGCTGGGAAG AGCTGTTACC
GGCCAGAACC ATACCGAAGT CCATCGCATA TCCGAACAAG CGCGACAATA TTTGCCGGGT
GTGCCGCTAT TTTACCTCTA CGATGCCATT TCCTATTATA TAGAGAAAAA AGGTTCAGAA
GCCAAGCACA TACTGCAAGA AGCATTGGAG CATATCGATG CAGAGAAAGA TCCCAACGGC
CTATCGGATA TTTATAGCCA ATTAGGCGAT CTTGCCTATG AAGAAAATAA GCCTGAAGAA
GCCTTCGCAA ACTACGAAAA AGCGTTGGAG TTGAACCCGC GCAACGTGGG AGTACTCAAT
AATTATGCGT ATTTCTTGGC CAAAGAAGGC GGTGATCTGG CCAAAGCCGA AAGAATGGCA
GCCCAATGCG TCAAGCTGTT ACCGGACAAT GCGGTCTCGC TCGACACTTA TGGTTGGGTA
TTCTTTCTAA GAGAAAACTA TACGTTGGCC AAACTCTACA TAGAAAAAGC CTTAGGACTG
GCTGCAGACA ACCCCGATGC TGATGTCGTA GAGCACCATG GCGATGTCCT CTATATGCTC
GGAGAGAAAG AAAAAGCTAT GTTGGAATGG AAACGGGCCA AAGAGATCGG TGGAGGAGGC
AGTCCCATGC TAGACAAGAA AATAGAACAA GGAAAATATA TCCCAGAAAA GAAGAAATGA
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| Protein sequence | MRIHSIILLL FLLVISPVAG SISITDSTAS KFDRYFYEGV RQREQENYAA AFDIFRYCHR
LNPNDAALLS ELGKLYIAIG RQEEGTRYLE QAYRLYPDNK NYGNILGAVY ERQGRADDAV
RLYEEMSEQF PSEDELRFKL ANMYVQAGEI DKAIYIYNRM EAQNAVNAAD ASNYAEIRAR
LYLMTGQTNK ALNELRRLCN RFPEVNEFRL KYAGTLLDSE KYDEAYEQLQ LIARTDSTSG
LYHFAMASYY LGTNEKEAAI NEMIKVAADK DVAPEQKLPI ILRFIGTDTD EEDAPKKEYN
ILLEKILASH PTEVDARLFY AELLEMQGDS IHAMEVCRPI TEFAPKEERA WKFMLGRAVT
GQNHTEVHRI SEQARQYLPG VPLFYLYDAI SYYIEKKGSE AKHILQEALE HIDAEKDPNG
LSDIYSQLGD LAYEENKPEE AFANYEKALE LNPRNVGVLN NYAYFLAKEG GDLAKAERMA
AQCVKLLPDN AVSLDTYGWV FFLRENYTLA KLYIEKALGL AADNPDADVV EHHGDVLYML
GEKEKAMLEW KRAKEIGGGG SPMLDKKIEQ GKYIPEKKK
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