| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG0876 |
|---|
| Symbol | trmE |
|---|
| ID | 2552901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Porphyromonas gingivalis W83 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002950 |
|---|
| Strand | - |
|---|
| Start bp | 939340 |
|---|
| End bp | 940896 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637149605 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | NP_905124 |
|---|
| Protein GI | 34540645 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.588217 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTGTT TAGAGCGAGG AGCTTCGTTT CGTCCTCTGA CTGAACTCCC TAATGGTTGT
CCTGGTGCAC ATTGGTATTT ATGGCACACC GCCTATCTTT GCAACCGATC TCATTCAATC
CTGACCTCCA ATATGTCTAT CCTCCATTCC TTTAATAAGG ACACCATCTG TGCCGTAGCC
ACTGCTCCGG GTGTGGGCGG TATTGCGGTG ATTCGTGTGT CCGGTGCGGA TGCTTTCCGC
CTCGTTAGCC CACTTTTTCT ATATCGTGGC AAGGCGATTG ACCTCAGCGG AGCCAAGCCT
CGCACCGCCC TCTATGGCGA AATCATGGAG GCGGACGAAC TCATTGACGA AGTTATCCTA
ACGTGTTTCC ATGGCCCGCA CTCCTTCACT GCCGAGCATA CAGTCGAGAT TGCCTGCCAT
GGCTCCATAT ATATACGTAG ACGTATTCTC GAGGCATTGA TCAATCAGGG CTGTCGTCTG
GCACAACCGG GCGAATTTAC TCGCCGTGCC TACCTCAATG GGCGTATGGA CCTGAGTAGT
GCCGAGGCGG TGGCGGATAT CATCGCCAGC GAGAGCAAGG CACAGCATCA GATGGCGATG
AAGCAACTGC GTGGTGGATA TAGCGAGGAA CTGAATGCTC TGCGTGAGGA ATTGCTTCGC
CTTACGGGGC TGATGGAGTT GGAATTGGAC TTCCCCGAAG AAGATGTGGA GTTCGCCGAT
CGTACCGAAT TGCTTGCCCT CTGCGATCAA ATCGAGCTCA AACTCAAGAA ACTCATCGAC
AGCTATCGCC TTGGCAATGC TGTCAAGCGT GGGATTCCTG TGGCGATTGT TGGCACGACT
AATGTGGGTA AGAGTACCCT GCTCAATACT TTGCTGGGCG AGGAGCGTGC CATCGTGAGC
GATATTCACG GCACCACGCG CGACACCATC GAGGACACGA TGCACATCGG AGGCTACCTC
TTCCGCTTCG TCGATACGGC AGGACTGAGA GAGACCGAAG ACACCATCGA GAGTCTTGGC
ATTGAGCGTA GCCGAAGCAA AATCAAAGAG GCAGATATTA TCCTTGCCGT GGTGGACGGT
ACGCGCATCA GCGAGGCCAA TCAGCTGGAC TATATCAAAA GCATTTGGGA CGAAAGGGAG
GAGCGAACCC TCATTCTACT TGTAAACAAA AGCGAAAGCC TCGCCGAGGC CGACCGAATC
GGACTCAGCG AGACTCTGCA AACGAAGCTC TCCACGCCCA CGAAACCGAT ATTCATCTCA
GCTCGTGAGG GTAGGGGGAT AGATGAACTC AAGGGTGAAC TTACCCAGAT CATGGAGACT
TCTGGCGCGA ACGAAGCCGA CCTCATTGTG AGCAATGCCC GCCATCATCA GCTCTTGCGG
GAGGCTTTCG ATGCCCTTCG GCGAATGCGT TTGGGCTTTG ATATGGGACT CTCGACCGAC
TTGCTAACGC TCGACCTAAG GCACGCCATC ACCTCCATCG GCGAAATTAC CGGCCGCGAA
ATCACCAGCG ACGACACCCT GCACTACATC TTCGCCCACT TCTGCATCGG CAAGTAA
|
|---|
| Protein sequence | MICLERGASF RPLTELPNGC PGAHWYLWHT AYLCNRSHSI LTSNMSILHS FNKDTICAVA
TAPGVGGIAV IRVSGADAFR LVSPLFLYRG KAIDLSGAKP RTALYGEIME ADELIDEVIL
TCFHGPHSFT AEHTVEIACH GSIYIRRRIL EALINQGCRL AQPGEFTRRA YLNGRMDLSS
AEAVADIIAS ESKAQHQMAM KQLRGGYSEE LNALREELLR LTGLMELELD FPEEDVEFAD
RTELLALCDQ IELKLKKLID SYRLGNAVKR GIPVAIVGTT NVGKSTLLNT LLGEERAIVS
DIHGTTRDTI EDTMHIGGYL FRFVDTAGLR ETEDTIESLG IERSRSKIKE ADIILAVVDG
TRISEANQLD YIKSIWDERE ERTLILLVNK SESLAEADRI GLSETLQTKL STPTKPIFIS
AREGRGIDEL KGELTQIMET SGANEADLIV SNARHHQLLR EAFDALRRMR LGFDMGLSTD
LLTLDLRHAI TSIGEITGRE ITSDDTLHYI FAHFCIGK
|
|---|
| |