| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG0827 |
|---|
| Symbol | |
|---|
| ID | 2552839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Porphyromonas gingivalis W83 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002950 |
|---|
| Strand | + |
|---|
| Start bp | 884306 |
|---|
| End bp | 885664 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637149563 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | NP_905083 |
|---|
| Protein GI | 34540604 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAACG CTGTGAATAT TTTGCAAGAA GGAAGTATGA TGAAATCCCT GACAAAGTTG
GGGATACCTA TTGTCATCGC AATGCTGATT ATGGCAATAT ACAATGTGGT AGATACTTTC
TGGGTTGCAC GTTTGGGAAC TCTTCCTGTC GCTGCCGTAT CAGTTGTTTT CCCTTTATCG
TTGGTGTTTC TTGGGATAGG GCTGATGTTT GGTGTTGGGG GCGGAGTGTA TATATCTCGC
TTATTGGGTG CGAAGCAAAT TGTCAAGGCT GGTCAGGTAG CTTCCGTCTC AGTGATCACC
TCTGTGATTT TAGCTGCTCT CATTGCCCTT GTATGCAATG CGTTTCTACC AGAAATTCTG
CTTTTCATGG GGGCAAACGA GGAGATGATG AGCTTAGCGG AAGCATATGG CAGACTGTTC
ATCGTTAGTT GTGTCATAGG AACGTTGAAT GTGTCGATGT CCAATATTAT AGTTTCTCAG
GGGGCTTCAA AAACGTCTGC ATCGGCAATG ATAATAGGTT CTGTTATAAA TGTCGCATTG
GATCCTCTAT TTATCTATGC TTTCGGCTGG GGTGTGAAAG GTGCTGCGTG GGCAACCATT
CTTTCAAGAA TCATTACAAC AATCATTTAC ACCTGCTTCT TTATGAAAGC AGAGGTGAAA
GTTTCGTTTG CCTTGTTCGT CCCAACGATA AGAATGTACT TGGACATCAT AAAGATAGGT
ATTTCAATGC TCTGTTTGCA ACTCCTCCAA ACACTTTCGA TTAGTTTATT GCAGAGAGCT
GCCGTAAAAT ATGGGGCAGA GGCTGTAGCA GCAGTAGGCA TCGTTCTGAA AATTGTAACA
TTGGGAACGA ACGTGGTTTT CGGATTTGTC AAGGGACTCC AACCGATGGC TGGCTATAAC
TACGGGGCAG AAAATTTCCA AAGGTTAAAA GAGGCAGTAC GTTGTTCCTT GATACTGACA
ACCTCATTTT GTGTACTTTG GAGCACTTTC ATACTCGTTT TTGCTTCTCC TGTTATCAGT
TGTTTCGGCA AAGACGAAAC AATGCAAGAA ATTGCACGAA TTGCCCTTAG AGCCAATACG
CTAATGTTTT TCACTTTCGG CTTCCAGTTT GTGTATTCCA CACTATATAT GGCAATCGGA
AGAGCAAGAC AGAGCCTTTT GCTCAATATT GGACGACAGG GACTCTTCTT TATTCCTGTA
ATATTGCTGC TCCCATCATA TTGGGGATTG AACGGAGTGC TTTATGCACA ACCGGTAGCC
GACGTCTTTG CAACTTTGAT GACACTGTTC TTTGCCATTC AAATTCATAG GGAAATTCGT
CATAAATCAC ATCTCACAAC AGAGAATCTA CAATGTTGA
|
|---|
| Protein sequence | MINAVNILQE GSMMKSLTKL GIPIVIAMLI MAIYNVVDTF WVARLGTLPV AAVSVVFPLS
LVFLGIGLMF GVGGGVYISR LLGAKQIVKA GQVASVSVIT SVILAALIAL VCNAFLPEIL
LFMGANEEMM SLAEAYGRLF IVSCVIGTLN VSMSNIIVSQ GASKTSASAM IIGSVINVAL
DPLFIYAFGW GVKGAAWATI LSRIITTIIY TCFFMKAEVK VSFALFVPTI RMYLDIIKIG
ISMLCLQLLQ TLSISLLQRA AVKYGAEAVA AVGIVLKIVT LGTNVVFGFV KGLQPMAGYN
YGAENFQRLK EAVRCSLILT TSFCVLWSTF ILVFASPVIS CFGKDETMQE IARIALRANT
LMFFTFGFQF VYSTLYMAIG RARQSLLLNI GRQGLFFIPV ILLLPSYWGL NGVLYAQPVA
DVFATLMTLF FAIQIHREIR HKSHLTTENL QC
|
|---|
| |