Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PG0594 |
Symbol | rpoD |
ID | 2552433 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Porphyromonas gingivalis W83 |
Kingdom | Bacteria |
Replicon accession | NC_002950 |
Strand | + |
Start bp | 652188 |
End bp | 653051 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637149356 |
Product | RNA polymerase sigma-70 factor |
Protein accession | NP_904881 |
Protein GI | 34540402 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGCAAC TTAAAATTTC CAAGTCGATC ACGAATCGTG AAAGCGCGTC TCTGGACAAG TATCTGCAGG AGATCGGTCG CGAGGACCTG ATCTCGGTCG AAGAAGAAGT AGAGTTGGCG CAAGCCATTA AACGCGGTGA TCGCAAAGCT CTTGAAAAGC TGACTCGTGC CAATCTTCGT TTCGTAGTAT CCGTAGCCAA ACAATACCAG AATCAGGGTC TCAGTTTGCC GGACTTGATC AATGAAGGAA ACCTCGGATT GATCAAAGCG GCAGAGAAAT TCGACGAAAC GCGCGGTTTT AAGTTTATCT CGTATGCCGT ATGGTGGATC CGCCAGTCCA TCCTGCAAGC ATTGGCCGAG CAGTCTCGTA TCGTCCGCCT GCCACTGAAT CAGGTGGGAA CACTCAACAA GATCATCAAG GCCCAGCAGA AATTCGAGCA GGAGAATGAG CGTCGCCCCT CGTCAGCAGA GTTGGCTAAG GAGCTGGACA TCGCAGAAGA CAAAATTGCC GATACGATGA AAGTATCCGG ACGGCATATC TCTGTGGATG CTCCTTTCGT GGAAGGTGAA GACAACAGCC TGCTGGATGT ACTCGTCAAT GAGGATACCC CCAATACGGA CAAGTCGCTG ATCAATGAAT CGCTGGCCGT TGAGATAGAA AGAGCTTTGT CCACACTGAC GGAGCGCGAA GCAGAGATCG TGAAGCTGTT CTTCGGCATT GCCGGCTGTC AAGAGATGAC ACTGGAAGAA ATCGGCGACA AATTCGGTCT CACCCGCGAA CGCGTCCGCC AGATAAAAGA GAAGGCTATT CGCCGTTTGC GACAGAGCAA CAAGTGCAAG AATCTGAAAG GTTATCTCGG CTAA
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Protein sequence | MRQLKISKSI TNRESASLDK YLQEIGREDL ISVEEEVELA QAIKRGDRKA LEKLTRANLR FVVSVAKQYQ NQGLSLPDLI NEGNLGLIKA AEKFDETRGF KFISYAVWWI RQSILQALAE QSRIVRLPLN QVGTLNKIIK AQQKFEQENE RRPSSAELAK ELDIAEDKIA DTMKVSGRHI SVDAPFVEGE DNSLLDVLVN EDTPNTDKSL INESLAVEIE RALSTLTERE AEIVKLFFGI AGCQEMTLEE IGDKFGLTRE RVRQIKEKAI RRLRQSNKCK NLKGYLG
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