| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG0562 |
|---|
| Symbol | |
|---|
| ID | 2551452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Porphyromonas gingivalis W83 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002950 |
|---|
| Strand | + |
|---|
| Start bp | 619362 |
|---|
| End bp | 621038 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637149327 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_904852 |
|---|
| Protein GI | 34540373 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2985] Predicted permease |
|---|
| TIGRFAM ID | [TIGR01625] AspT/YidE/YbjL antiporter duplication domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCAA TAGTTCTTTG GCTCCGCGAA GTTTTCCTCG AGCCGTCGGT TACGCAGACG
ATCATTATCC TCAGTCTCGT ATGCGCTTTG GGCTTGCAGT TGGGCAAGCT TCGTATCGGC
ACTATCTCGC TTGGCATCAC TTTCGTCTTT TTTGTCGGGA TTTTGGCTTC TCATTTCGGA
GTTACGACCG ATCCCGTGAT GCTCACTTTT GCGCAGAACT TCGGCCTTGT AATCTTTGTC
TATGCGCTGG GTTTACAGGT AGGCCCGTCT TTTTTCCCTT CGCTCAAGAA GGGGGGCATT
GCCCAGAATC TTATCTCCTT GGGATTAGTC CTACTCACAT TTCTCCTGTG CATCCTCCTT
TATTATATCC TTGGCATTTC CATGCCCAAT CTGATGGGTA TCGTGGCCGG TGCCACTACC
AATACCCCTG CTTTGGGTGC AGCCCAAACG ACCCTCCATC AGATCAATCC CGATGCCACG
GCCGAAATGG CCGAAATGGC TCTGGCCTGT GCCGTTACCT ATCCTTTGGG CGTTGTGGGT
GTTATTATTG CTTTGGCCCT GCTGAAAGTT ATGATGCCCA AGGTCGAGGA ACGAGACGAT
TCCGAGGCTC CCAAAGCTTT CTTCTCCGAG TATGAAATCT GCAATCCTGC TTTGGATGGC
AAAAGCGTTC GCGAAGTAGC ACTCCTGCTC AAGCGCCCTT TCGTCATTAC ACGGGTCTGG
CACAACGGTA AAGTCGAGAT CCCTACCTCT GATATGATCC TCTATTTCGG CGATCACATC
CTCGCTGTCT CCGGTGAAGA GGATACCTCA CAGCTCGAAA TACTCTTCGG CAAGAGAGAA
ATGAAGGATT GGAACCGTCC CGATATAGAC TGGAACAGTG TGGACAAACA GCTCGTATCA
CGCAGGCTGG TAATAACTCG CCCTAAGCTC AACGGCGTAC GCCTCGGCAT GCTGAAAATC
CGCAACCTGT ATGGGGTCAA TATCAGTCGT GTGGACAGGG CCGGAGTAGA ATTGCTGCCG
GATAGAGATC TTCGCCTGCA GTTGGGCGAC CGCCTGACCG TCGTTGGCGA AGGCAAGGCT
GTAGAGCGTG TGGCCGAGAT TTTGGGTGAT GAGGTCAAAC AGTTGGACAA TCCTCATTTG
ACCACTTTGT TCGGAGGCCT TGTCTTGGGA TGTGTTTTCG GCATGATCCC CTTCTATCTG
CCCGGTGTCA GTATGCCTAT CAAGCTGGGA TTAGCCGGCG GCCCTATCAT CATCGGTATT
CTGATGGGAG CATTCGGGCC ACGCTTCCAC CTGACCACCT ATGTAACCAA CAGTGCCAAT
CTACTTCTGC GCCAATTCGG TATCATCCTC TATCTCGGTG GACTTGGATT GGCCAGTGGA
GCCAATTTCT TTGATACCAT TATCCATGGG GACGGTCTGC TTTGGGTCGG AGCGGGCTTT
TTGATTACGA TGCTTCCTAC GCTATTGGTC GGTTGGGCTT CTATCAAGTT GCTCCGCAAC
AGGTACGATG GCACAGCCGG TATGATATGC GGAAGTACGG CCAATCCGAT GGCTCTCGAC
TATGTGAATA GCCAGCTCAA AGGTGACGGA GCCTCTGTGG TGTACGCCAC CGTGTATCCG
CTTTCGATGT TCGTCCGTAT CATCTTCGCA CAAATCATGA TCCTCATCTT TGCATAG
|
|---|
| Protein sequence | MDAIVLWLRE VFLEPSVTQT IIILSLVCAL GLQLGKLRIG TISLGITFVF FVGILASHFG
VTTDPVMLTF AQNFGLVIFV YALGLQVGPS FFPSLKKGGI AQNLISLGLV LLTFLLCILL
YYILGISMPN LMGIVAGATT NTPALGAAQT TLHQINPDAT AEMAEMALAC AVTYPLGVVG
VIIALALLKV MMPKVEERDD SEAPKAFFSE YEICNPALDG KSVREVALLL KRPFVITRVW
HNGKVEIPTS DMILYFGDHI LAVSGEEDTS QLEILFGKRE MKDWNRPDID WNSVDKQLVS
RRLVITRPKL NGVRLGMLKI RNLYGVNISR VDRAGVELLP DRDLRLQLGD RLTVVGEGKA
VERVAEILGD EVKQLDNPHL TTLFGGLVLG CVFGMIPFYL PGVSMPIKLG LAGGPIIIGI
LMGAFGPRFH LTTYVTNSAN LLLRQFGIIL YLGGLGLASG ANFFDTIIHG DGLLWVGAGF
LITMLPTLLV GWASIKLLRN RYDGTAGMIC GSTANPMALD YVNSQLKGDG ASVVYATVYP
LSMFVRIIFA QIMILIFA
|
|---|
| |