Gene PG0540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPG0540 
Symbol 
ID2552336 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePorphyromonas gingivalis W83 
KingdomBacteria 
Replicon accessionNC_002950 
Strand
Start bp591763 
End bp594912 
Gene Length3150 bp 
Protein Length1049 aa 
Translation table11 
GC content50% 
IMG OID637149308 
ProductAcrB/AcrD/AcrF family protein 
Protein accessionNP_904833 
Protein GI34540354 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTATAT ACGAATCGGC TGTAAAAAAG CCGGTCACAA CCATATTGAT ATTCGTGGCG 
ATAGCTATTT TCGGGCTATT CTCACTGAGT CGTCTTTCCA TCGACTTGTA TCCCAAGATT
GAGACGAGCA ATATCATGGT CGTGACCTCC TATGCCGGAG CCAGTGCATC GGACATAGAG
AACAACGTTA CGAAGGTCTT GGAGAATACG CTTAACGGGG TTAGCAATCT CAAGCACATT
ACTTCGAAGA GTCGGGAGAA TGCTTCCGTC ATTACGCTCC AATTCAATGA AGGTGTGGAC
ATCGAAGTGG CTACCAATGA TGTGCGCGAC AAGCTCGATG CCGTCTCCAA CTTCCTGCCC
GATGATGTGA ACAAACCGAT GATCTTCAAG TTCGGTACTG ACGATATTCC TATCACCATG
CTATCCGTGC AGGCCAAAGA GAGTACGATG GCCCTGTCGA AGATCCTCGA AGACAAGGTC
ACGAATGCTC TGGCACGCCT TGATGGCGTA GGTGCGGTGA GCATTATGGG TACTGTGAAG
CGGGAAATAC AAGTGTATTG CGATCCGGCC AAACTGGAAG CATACAACCT GACCGTAGAA
GCTGTGAGCC AAATCATATC GGCCGAGAAC AAGAATGTAC CGGCCGGTCT GATCGATTTG
GGCAATAAGA CCAGTTCGAT CCGCATACAG GGCGAGTTTG CCGATGCACG CCAGCTAAAC
CAAATCGTAG TGGCCAGCGT GGGCGGTCGC AACGTCTATC TGAGCGATGT GGCTCGTGTG
GAGGATACAC ATGCCGAAAA TGAACAGGAG AGCTACAACA ATAATGTGCG TGGGGCTATG
ATTATGATCA ACAAACAGTC CGGAGCCAAT TCGGTGGCTA TCTCCCGTGC TGTCCGCGGT
GCTCTGCCCG AGATACAGGC TTCGCTCCCT TCGGATGTGG AACTGGGTAC CATTTTCGAT
ACTTCGGACA ACATCGTCAA TACGATCAAT AGTCTGCGCG ATACGATTGC TATTACGTTC
GTCATCGTTA TTCTTGTGGT TCTGTTTTTC CTCGGACGAT GGCGTGCCAC ATTTATCATC
GGTCTGACGA TCCCTATTTC ACTGGTTGCC TCCTTTATCT ACCTGATGGC TACAGGCAAT
ACGTTGAATA TCATTTCTCT CAGCTCCCTC TCTATCGCTA TCGGTATGGT AGTGGACGAT
GCCATTGTAG TGCTCGAAAA CGTAACGACA CATATTGAAC GGGGCAGCTA TCCCAAGCAG
GCTGCCATAC ACGGCACGAA CGAAGTGGGG ATCTCCGTTA TAGCTTCCAC GCTGACGATG
CTGGCTGTAT TCCTCCCATT GACGATGATT CAGGGGCTTA CGGGTATCCT TTTCCGTCAG
TTGGGTTGGA TCGTGAGTAT TATCATGATT ATCTCTACGG TAGCTGCTCT CAGCCTGACG
CCGATGCTCT GTTCGCAGTT GCTTCAGCGC GACAAAAAGC AAGGACGGCT GCAACAAAAG
CTCTTTGTCC CGATCGAACG CTTTCTTGAT TCTGTAGATC GAGCATATGA GCGTTTCCTG
AATTGGACTG TGAGACACAG AACCGTTACG ATAGTCAGTG CTTTTATCAT TTTTGCAGCA
AGTCTGATGA TGACACCACT GCTCAAAACC GAATTCTTCC CTCAGTCCGA CAATGGCTAT
ATCCAAATTC AGGCAGAATA TCCGGTGGGC ACGGGAGTCA ATCTGCCACG AGCCTTTGCT
CTTCGTATGA TCGACAGTTG GGAGAAAGAA ATACCGGAAA TCGACAGAAC GAGCTTTAGT
GTCGGTCAGG CCGAGGCTTC CAGCATGTTT GCCGCCATGC AGGACAATGG TACGAATATC
ATCACTTTCC ATATCGGTCT TACCGGACGC AACGAGAGAA AACGCTCCAT GAACGAAGTG
GCCGACCAGA TACGTACCAT GCTGGATGAT TATCCTGAGA TTCACAGTTA TAAGGTTACT
CCGGGCGGAA GCGGTGGCGG TATGGGCGGA CAACCCACAG TAAATCTGGA TATATACGGT
TACGACTTCA ATAAAACGGG CGATCTCGCA GAGAGATTCA GTCGTCTGAT GAAAGAGGAT
GCCAGATGTG CCCAAGCGAC AATCAGCCGA AAAGACTACG TACCGGAGTA TCAATTCGTA
TTTGATCGTA CCAAATTGGC CGAGAACGGG CTGAACAGTA CCACGGCTGC CATGTTCCTG
CGCAACCGCG TCAATGGCAG GGTGGCATCT ACCTATCGCG AAGAAGGCGA CGAGTACGAT
ATTCGCGTGC GCTTGGCCCC TGAGTTCAGG CGATCATTGA GGGACTTGGA AAATATCCTC
ATTTATACGC CTCAGGGCAA AGGTGTTCGT CTGGGAGAGC TGGGTAAAAT AGAAGAGCTG
TACACTCCTC CCACCATTGA ACGAAAGGAT CGTCAGCGTG TCGTTATCGT AGCTTCCACG
GCTGTCAAAG GAGCTGCATT GAGCGATTTG GTCGAAGTGG CCAAAGAAAA GATTGCTCAA
CTGGAGATTC CCGACGGGAT TGACTACAAA ATCAGTGGTA CATACGAGGA CCAGCAGAAG
ACATTTGCAG ACTTGAGCAC CCTTATGCTG CTGATCGTGA TACTCGTGTT TATCGTCATG
GCAGCACAGT TCGAGAGTCT CGTCGATCCG TTTGTGATCA TGTTTTCCAT ACCGTTTGCT
TTCACAGGTG TCATAGTCGG TCTTATCATT ACCAATACCA CTTTCAGCGC TATGTCCTTT
ATCGGTCTGA TTATGCTGAT GGGTATCGTG GTGAAGAACG GTATTGTGCT CATCGATTAC
ACTCGTCTGT GTCGCGAACG CGGTATGGGC ATTCTCTCTG CCGTAGTACA AGCCGGCCGC
TCACGTTTGC GCCCGGTGCT TATGACTACT CTGACTACCA TATTGGGTAT GGTACCTATG
GCTATCGGAA TCGGAGAAGG ATCCGAACTA TGGCAGCCGA TGGGGGTTAC TGTGGCATGG
GGGCTGTCCG TCTCCACACT GATTACGCTC ATTATCGTCC CTACCGTTTA TGCCGTATTT
GCCTCGAACG GGATGAGGAG ACAGCGTAGA CTACTGGCCA AGAAGTATGC AAAAAAAGAA
AATAAGAGCA GAGTATGGAA CAGAAAATGA
 
Protein sequence
MSIYESAVKK PVTTILIFVA IAIFGLFSLS RLSIDLYPKI ETSNIMVVTS YAGASASDIE 
NNVTKVLENT LNGVSNLKHI TSKSRENASV ITLQFNEGVD IEVATNDVRD KLDAVSNFLP
DDVNKPMIFK FGTDDIPITM LSVQAKESTM ALSKILEDKV TNALARLDGV GAVSIMGTVK
REIQVYCDPA KLEAYNLTVE AVSQIISAEN KNVPAGLIDL GNKTSSIRIQ GEFADARQLN
QIVVASVGGR NVYLSDVARV EDTHAENEQE SYNNNVRGAM IMINKQSGAN SVAISRAVRG
ALPEIQASLP SDVELGTIFD TSDNIVNTIN SLRDTIAITF VIVILVVLFF LGRWRATFII
GLTIPISLVA SFIYLMATGN TLNIISLSSL SIAIGMVVDD AIVVLENVTT HIERGSYPKQ
AAIHGTNEVG ISVIASTLTM LAVFLPLTMI QGLTGILFRQ LGWIVSIIMI ISTVAALSLT
PMLCSQLLQR DKKQGRLQQK LFVPIERFLD SVDRAYERFL NWTVRHRTVT IVSAFIIFAA
SLMMTPLLKT EFFPQSDNGY IQIQAEYPVG TGVNLPRAFA LRMIDSWEKE IPEIDRTSFS
VGQAEASSMF AAMQDNGTNI ITFHIGLTGR NERKRSMNEV ADQIRTMLDD YPEIHSYKVT
PGGSGGGMGG QPTVNLDIYG YDFNKTGDLA ERFSRLMKED ARCAQATISR KDYVPEYQFV
FDRTKLAENG LNSTTAAMFL RNRVNGRVAS TYREEGDEYD IRVRLAPEFR RSLRDLENIL
IYTPQGKGVR LGELGKIEEL YTPPTIERKD RQRVVIVAST AVKGAALSDL VEVAKEKIAQ
LEIPDGIDYK ISGTYEDQQK TFADLSTLML LIVILVFIVM AAQFESLVDP FVIMFSIPFA
FTGVIVGLII TNTTFSAMSF IGLIMLMGIV VKNGIVLIDY TRLCRERGMG ILSAVVQAGR
SRLRPVLMTT LTTILGMVPM AIGIGEGSEL WQPMGVTVAW GLSVSTLITL IIVPTVYAVF
ASNGMRRQRR LLAKKYAKKE NKSRVWNRK