Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PG0540 |
Symbol | |
ID | 2552336 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Porphyromonas gingivalis W83 |
Kingdom | Bacteria |
Replicon accession | NC_002950 |
Strand | + |
Start bp | 591763 |
End bp | 594912 |
Gene Length | 3150 bp |
Protein Length | 1049 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637149308 |
Product | AcrB/AcrD/AcrF family protein |
Protein accession | NP_904833 |
Protein GI | 34540354 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTATAT ACGAATCGGC TGTAAAAAAG CCGGTCACAA CCATATTGAT ATTCGTGGCG ATAGCTATTT TCGGGCTATT CTCACTGAGT CGTCTTTCCA TCGACTTGTA TCCCAAGATT GAGACGAGCA ATATCATGGT CGTGACCTCC TATGCCGGAG CCAGTGCATC GGACATAGAG AACAACGTTA CGAAGGTCTT GGAGAATACG CTTAACGGGG TTAGCAATCT CAAGCACATT ACTTCGAAGA GTCGGGAGAA TGCTTCCGTC ATTACGCTCC AATTCAATGA AGGTGTGGAC ATCGAAGTGG CTACCAATGA TGTGCGCGAC AAGCTCGATG CCGTCTCCAA CTTCCTGCCC GATGATGTGA ACAAACCGAT GATCTTCAAG TTCGGTACTG ACGATATTCC TATCACCATG CTATCCGTGC AGGCCAAAGA GAGTACGATG GCCCTGTCGA AGATCCTCGA AGACAAGGTC ACGAATGCTC TGGCACGCCT TGATGGCGTA GGTGCGGTGA GCATTATGGG TACTGTGAAG CGGGAAATAC AAGTGTATTG CGATCCGGCC AAACTGGAAG CATACAACCT GACCGTAGAA GCTGTGAGCC AAATCATATC GGCCGAGAAC AAGAATGTAC CGGCCGGTCT GATCGATTTG GGCAATAAGA CCAGTTCGAT CCGCATACAG GGCGAGTTTG CCGATGCACG CCAGCTAAAC CAAATCGTAG TGGCCAGCGT GGGCGGTCGC AACGTCTATC TGAGCGATGT GGCTCGTGTG GAGGATACAC ATGCCGAAAA TGAACAGGAG AGCTACAACA ATAATGTGCG TGGGGCTATG ATTATGATCA ACAAACAGTC CGGAGCCAAT TCGGTGGCTA TCTCCCGTGC TGTCCGCGGT GCTCTGCCCG AGATACAGGC TTCGCTCCCT TCGGATGTGG AACTGGGTAC CATTTTCGAT ACTTCGGACA ACATCGTCAA TACGATCAAT AGTCTGCGCG ATACGATTGC TATTACGTTC GTCATCGTTA TTCTTGTGGT TCTGTTTTTC CTCGGACGAT GGCGTGCCAC ATTTATCATC GGTCTGACGA TCCCTATTTC ACTGGTTGCC TCCTTTATCT ACCTGATGGC TACAGGCAAT ACGTTGAATA TCATTTCTCT CAGCTCCCTC TCTATCGCTA TCGGTATGGT AGTGGACGAT GCCATTGTAG TGCTCGAAAA CGTAACGACA CATATTGAAC GGGGCAGCTA TCCCAAGCAG GCTGCCATAC ACGGCACGAA CGAAGTGGGG ATCTCCGTTA TAGCTTCCAC GCTGACGATG CTGGCTGTAT TCCTCCCATT GACGATGATT CAGGGGCTTA CGGGTATCCT TTTCCGTCAG TTGGGTTGGA TCGTGAGTAT TATCATGATT ATCTCTACGG TAGCTGCTCT CAGCCTGACG CCGATGCTCT GTTCGCAGTT GCTTCAGCGC GACAAAAAGC AAGGACGGCT GCAACAAAAG CTCTTTGTCC CGATCGAACG CTTTCTTGAT TCTGTAGATC GAGCATATGA GCGTTTCCTG AATTGGACTG TGAGACACAG AACCGTTACG ATAGTCAGTG CTTTTATCAT TTTTGCAGCA AGTCTGATGA TGACACCACT GCTCAAAACC GAATTCTTCC CTCAGTCCGA CAATGGCTAT ATCCAAATTC AGGCAGAATA TCCGGTGGGC ACGGGAGTCA ATCTGCCACG AGCCTTTGCT CTTCGTATGA TCGACAGTTG GGAGAAAGAA ATACCGGAAA TCGACAGAAC GAGCTTTAGT GTCGGTCAGG CCGAGGCTTC CAGCATGTTT GCCGCCATGC AGGACAATGG TACGAATATC ATCACTTTCC ATATCGGTCT TACCGGACGC AACGAGAGAA AACGCTCCAT GAACGAAGTG GCCGACCAGA TACGTACCAT GCTGGATGAT TATCCTGAGA TTCACAGTTA TAAGGTTACT CCGGGCGGAA GCGGTGGCGG TATGGGCGGA CAACCCACAG TAAATCTGGA TATATACGGT TACGACTTCA ATAAAACGGG CGATCTCGCA GAGAGATTCA GTCGTCTGAT GAAAGAGGAT GCCAGATGTG CCCAAGCGAC AATCAGCCGA AAAGACTACG TACCGGAGTA TCAATTCGTA TTTGATCGTA CCAAATTGGC CGAGAACGGG CTGAACAGTA CCACGGCTGC CATGTTCCTG CGCAACCGCG TCAATGGCAG GGTGGCATCT ACCTATCGCG AAGAAGGCGA CGAGTACGAT ATTCGCGTGC GCTTGGCCCC TGAGTTCAGG CGATCATTGA GGGACTTGGA AAATATCCTC ATTTATACGC CTCAGGGCAA AGGTGTTCGT CTGGGAGAGC TGGGTAAAAT AGAAGAGCTG TACACTCCTC CCACCATTGA ACGAAAGGAT CGTCAGCGTG TCGTTATCGT AGCTTCCACG GCTGTCAAAG GAGCTGCATT GAGCGATTTG GTCGAAGTGG CCAAAGAAAA GATTGCTCAA CTGGAGATTC CCGACGGGAT TGACTACAAA ATCAGTGGTA CATACGAGGA CCAGCAGAAG ACATTTGCAG ACTTGAGCAC CCTTATGCTG CTGATCGTGA TACTCGTGTT TATCGTCATG GCAGCACAGT TCGAGAGTCT CGTCGATCCG TTTGTGATCA TGTTTTCCAT ACCGTTTGCT TTCACAGGTG TCATAGTCGG TCTTATCATT ACCAATACCA CTTTCAGCGC TATGTCCTTT ATCGGTCTGA TTATGCTGAT GGGTATCGTG GTGAAGAACG GTATTGTGCT CATCGATTAC ACTCGTCTGT GTCGCGAACG CGGTATGGGC ATTCTCTCTG CCGTAGTACA AGCCGGCCGC TCACGTTTGC GCCCGGTGCT TATGACTACT CTGACTACCA TATTGGGTAT GGTACCTATG GCTATCGGAA TCGGAGAAGG ATCCGAACTA TGGCAGCCGA TGGGGGTTAC TGTGGCATGG GGGCTGTCCG TCTCCACACT GATTACGCTC ATTATCGTCC CTACCGTTTA TGCCGTATTT GCCTCGAACG GGATGAGGAG ACAGCGTAGA CTACTGGCCA AGAAGTATGC AAAAAAAGAA AATAAGAGCA GAGTATGGAA CAGAAAATGA
|
Protein sequence | MSIYESAVKK PVTTILIFVA IAIFGLFSLS RLSIDLYPKI ETSNIMVVTS YAGASASDIE NNVTKVLENT LNGVSNLKHI TSKSRENASV ITLQFNEGVD IEVATNDVRD KLDAVSNFLP DDVNKPMIFK FGTDDIPITM LSVQAKESTM ALSKILEDKV TNALARLDGV GAVSIMGTVK REIQVYCDPA KLEAYNLTVE AVSQIISAEN KNVPAGLIDL GNKTSSIRIQ GEFADARQLN QIVVASVGGR NVYLSDVARV EDTHAENEQE SYNNNVRGAM IMINKQSGAN SVAISRAVRG ALPEIQASLP SDVELGTIFD TSDNIVNTIN SLRDTIAITF VIVILVVLFF LGRWRATFII GLTIPISLVA SFIYLMATGN TLNIISLSSL SIAIGMVVDD AIVVLENVTT HIERGSYPKQ AAIHGTNEVG ISVIASTLTM LAVFLPLTMI QGLTGILFRQ LGWIVSIIMI ISTVAALSLT PMLCSQLLQR DKKQGRLQQK LFVPIERFLD SVDRAYERFL NWTVRHRTVT IVSAFIIFAA SLMMTPLLKT EFFPQSDNGY IQIQAEYPVG TGVNLPRAFA LRMIDSWEKE IPEIDRTSFS VGQAEASSMF AAMQDNGTNI ITFHIGLTGR NERKRSMNEV ADQIRTMLDD YPEIHSYKVT PGGSGGGMGG QPTVNLDIYG YDFNKTGDLA ERFSRLMKED ARCAQATISR KDYVPEYQFV FDRTKLAENG LNSTTAAMFL RNRVNGRVAS TYREEGDEYD IRVRLAPEFR RSLRDLENIL IYTPQGKGVR LGELGKIEEL YTPPTIERKD RQRVVIVAST AVKGAALSDL VEVAKEKIAQ LEIPDGIDYK ISGTYEDQQK TFADLSTLML LIVILVFIVM AAQFESLVDP FVIMFSIPFA FTGVIVGLII TNTTFSAMSF IGLIMLMGIV VKNGIVLIDY TRLCRERGMG ILSAVVQAGR SRLRPVLMTT LTTILGMVPM AIGIGEGSEL WQPMGVTVAW GLSVSTLITL IIVPTVYAVF ASNGMRRQRR LLAKKYAKKE NKSRVWNRK
|
| |