| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG0539 |
|---|
| Symbol | |
|---|
| ID | 2552345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Porphyromonas gingivalis W83 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002950 |
|---|
| Strand | + |
|---|
| Start bp | 590714 |
|---|
| End bp | 591766 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637149307 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | NP_904832 |
|---|
| Protein GI | 34540353 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAT CGAATACACT GGGCAGTGCT ATCCTCCTCA TAGTCCTGCC GTTCCTCATT
CTCACGAGCT GCAATGGCAA GAAAGAGAGC CGGCCGTCTG CTGCTGATTC GGCAGCTATG
GCAGCCAAAT TGGTGGAGAC GACTATAGTG AAGACCGACA CGCTGAATGA GGTACTGAGT
TTCACAGCTA CCGTTCGGGC CGAAGTGACC AACAACATTA CCCCTCAGAT GGGCAATAGA
ATCGTACGCC TTACGGCCGA AGTAGGTGAT CGAGTGGGAC GCGGACAGGT GCTCGCCGAG
TTGGATCGGA GCCAACTGAC CCAGGCCAAA GTACAACTGG AGAATACGCG CACCAATTTC
CAGCGTATGG ATGAGCTGTA CAAAATAGGT GGCATAGCCA AACAGCAGTG GGATGCGCTC
AAAACGCAGC TCGACGTGGC CGAGACTACT TACAACAATC TGCTGGAGAA CACCGTGCTC
CGAAGCCCTA TATCCGGTGT GATTACCGCA CGCAATTATG ATAGCGGCGA TATGGCTTCT
CCCACGAAAC CTATCTATGT GGTAGAACAG ATAGCTCCCG TAAAGCTCCG CATCGACGTC
TCCGAACAGT ATTTCTCTCG CCTGAAAAAG GGTATGCCTG CCACTATTAC GGTAGATGCC
CTTCAGGGAC AAACCTTCGA AGGCAAAATC TCCCTGGTCT ATCCCGCCGT GGATGCTTCT
ACGCATACGA TCGGCGTGGA GATACAGATT GCTAATAGGG ATCAACTGCT TCGGCCGGGT
ATGTATGCCC GAGTAAATCT CGATTTTGGC CACAAATCGG CCGTTATGGT AGAAGATTTG
GCCGTGGTAA AACAGGTAGG CAGTGGCGAA TTCTTTGTCT TTGTAGTGGA AAATGGTAAG
GCTGTCCGCC GCATGGTGAA AGTCGGAGCC AGACAAAACG ATAGCTATGA GATCATCGAA
GGTCTCAATG TGGGCGAGAC AGTGGTTACA GCCGGCATGA ACAACCTTAT GGATGGCCAG
TCCGTCAGAA TTAAAGAACA AAGCAAACTA TGA
|
|---|
| Protein sequence | MKRSNTLGSA ILLIVLPFLI LTSCNGKKES RPSAADSAAM AAKLVETTIV KTDTLNEVLS
FTATVRAEVT NNITPQMGNR IVRLTAEVGD RVGRGQVLAE LDRSQLTQAK VQLENTRTNF
QRMDELYKIG GIAKQQWDAL KTQLDVAETT YNNLLENTVL RSPISGVITA RNYDSGDMAS
PTKPIYVVEQ IAPVKLRIDV SEQYFSRLKK GMPATITVDA LQGQTFEGKI SLVYPAVDAS
THTIGVEIQI ANRDQLLRPG MYARVNLDFG HKSAVMVEDL AVVKQVGSGE FFVFVVENGK
AVRRMVKVGA RQNDSYEIIE GLNVGETVVT AGMNNLMDGQ SVRIKEQSKL
|
|---|
| |