| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG0395 |
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| Symbol | rpoC |
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| ID | 2551908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Porphyromonas gingivalis W83 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002950 |
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| Strand | + |
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| Start bp | 429064 |
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| End bp | 433365 |
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| Gene Length | 4302 bp |
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| Protein Length | 1433 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637149171 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | NP_904701 |
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| Protein GI | 34540222 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTTA GAAAAGAAAA TAAGATAAAG AACAACTTCT CGAAGATTCG TATCACCTTG
GCTTCTCCTG AAGAGATTCT TGAGAACTCA TTCGGAGAAG TATTGAAGCC GGAGACGATC
AATTATCGTA CCTACAAGCC GGAACGAGAT GGCCTATTCT GTGAACGCAT CTTCGGTCCG
GTTAAGGATT TTGAATGTCA CTGTGGCAAA TACAAGCGTA TTCGATACCG TGGTATCGTA
TGTGATCGCT GTGGAGTCGA GGTAACGGAA AAGAAAGTTC GCCGTGAGCG TATGGGGCAC
ATCCATTTGG TCGTACCTGT TGCTCATATT TGGTATTTCC GTTCTCTTCC GAATAAGATC
GGCTATTTAT TAGGACTACC TACCAAGAAG TTGGATGCCA TCATTTACTA TGAACGCTAC
GTTGTTATTC AACCGGGTGT TGCCGAAGGG TTGAGTCAAC TTGATCTATT GTCAGAGGAA
GAATACCTCG ACAAGCTTGA TGAAATAGAG CGCACTCACA AGGGCAACCA AAATTTGGAG
GATACCAATC CGGACAAATT TATTGCCAAA ATTGGGGCAG AGGCTATTTA TGATCTTCTA
TGTCGTGTGG ATCTGGATTC TATTTCCTAC GAATTGCGAG ATCGTGCCAA TACAGATGGT
TCGCAGCAAC GTAAAACAGA AGCACTTAAA CGTCTTCAAG TCGTTGAAAG TTTCCGTGCA
TCCAAAGGTG TGAATCGTCC TGAGTGGATG GTTATGAAAG TGATTCCGGT TATCCCGCCG
GATCTTCGTC CTTTAGTTCC TTTGGATGGT GGACGTTTCG CTACTTCCGA TCTGAACGAC
TTGTACCGTC GCGTTATTAT CCGTAACAAC CGTCTCAAAC GATTGATCGA GATCAAAGCT
CCTGAAGTTA TCTTACGCAA TGAAAAGCGC ATGCTACAGG AAGCGGTTGA CTCCCTTTTC
GACAACTCGC GGAAGTCAAG TGCGGTTAAG TCTGACAACA ATCGTCCTTT GAAATCCCTT
TCTGATAGTC TCAAAGGCAA ACAAGGTCGT TTCCGTCAGA ACTTGCTTGG TAAGCGTGTC
GATTATTCTG CTCGTTCCGT TATCGTTGTT GGTCCGGAGC TTAAGATGCA TGAGTGCGGA
CTTCCGAAAG ACATGGCAGC CGAACTCTAC AAACCCTTCA TCATTCGCAA GTTGATTGAG
CGTGGCATAG TGAAGACAGT CAAGAGTGCC AAGAAGATTG TAGACCGTAA AGAGCCTGTT
ATCTGGGATA TTTTGGAGTA CGTGATGAAA GGACATCCGG TCCTTCTGAA CCGTGCACCG
ACTCTTCACC GACTAGGTAT TCAAGCATTC CAACCCAAAC TGATAGAAGG AAAAGCAATA
CAGTTGCATC CATTGAGTTG TACTGCATTT AATGCGGACT TCGATGGAGA CCAAATGGCT
GTACACCTTC CTCTGAGCAA CGAAGCTATT CTTGAGGCGC AATTGCTTAT GTTGGCTTCA
CATAACATTC TTAACCCTGC CAATGGAGCA CCGATTACCG TTCCTTCACA GGATATGGTA
TTGGGACTCT ATTATATTAC CAAGCTACGT CCCAATACCA AAGGGCACGG CCTGATTTTC
TATGGCCCTG AAGAAGCGAC AATAGCCTAT AACGAGGGTA AAGTCGATAT TCATGCGCCG
ATTAAGGTCT ATGTAGAGGA TTACGAGAAC GGAGAACTTG TTCGTCGTAT GGTAGAGACA
TCCGTAGGGC GACTGATGGT AAACGAATAT GTACCGAAGA AGGTAGGCTA TGTCAATGAA
GTACTCGGGA AAAAAGCTCT ACGAGATATT ATCGGTAGCG TAATCAAGAT CTGCGGAGTA
GCTACAACAG CCAAATTCTT GGATGATATC AAGAATTTGG GTTACTACAT GGCTTTTAAG
GGTGGCTTGT CTTTCAACTT GGCAGATGTG CTTATTCCTG ATGAGAAAGA CCAATTGATC
CAAGAAGGTT ACACTGCCGT CGAGCAGATT ATGCAAGACT ACAGTATGGG ATTCATCACC
TTTAATGAAC GATACAATCA GATTATCGAC ACATGGACAC ATATCAATGG CCGTTTGTCA
AATGTTCTGA TCAAGCAACT CAGTTCAGAC AATGACGGAT TCAACTCTGT CTTCATGATG
ATGGATTCCG GAGCACGTGG TTCCAAGGAA CAGATTCGTC AGTTGTCAGG TATGCGTGGA
TTGATGGCCA AGCCCCAAAA GAGTGGAGCC GAAGGAGGTC AGATTATTGA AAACCCCATT
CTTTCAAACT TCAAGGAAGG ACTCTCGGTA CTTGAATACT TTATTTCTAC TCATGGTGCA
CGTAAGGGGC TTGCCGATAC CGCATTGAAA ACGGCAGATG CTGGTTATCT CACCCGTCGT
CTTGTGGACG TTTCTCACGA TGTTATTATC ACAGAGGAAG ATTGTGGCAC GCTACGCGGA
CTGCTTACTA CCGAGCTAAA GCAAAACGAA GATGTCGTTG CTTCCTTGTA CGAACGTATC
CTTGGGCGCG TCTCTGTTCA CGATATTATC CATCCTACTA CAGGGGATAT AATCGTTAGA
GCTGGAGAAG AGATCAGAGA GCAGGCAGCA CAGATTATCG AAGATTCACC TATCGAAGCT
GTTGAAATCC GTTCTGTTCT CACCTGCGAA TCCAAGAAAG GAGTATGTGC CAAGTGCTAT
GGTAGAAATC TTGCTACCAA CCGCATGGTA CAACGGGGTG AGGTCGTAGG CGTTATTGCA
GCTCAGTCCA TTGGAGAGCC GGGTACACAG CTTACTCTCC GAACATTCCA CGTCGGAGGT
ATCGCATCCA ATGTGGCAAC GGAGAATAGC TTGCTCTCCA AATATGATGG TATCTTGGAA
TTCGAGGAAC TACGTGCTGT GGATGTAACA GACGAATCGC ATCAGGTCGT AGTGAGTCGG
ATGACTGAAT TGCGTATTGC CGATCCGAAT ACCGGTATCA TTTTGGCCAA TCACAATATC
CCCTACGGTG CAAAATTGTT CTTCCGCCAA GGTGATGCAG TCAAGAAAGG TGACAAAATC
ATCGAATGGG ATCCGTTCAA TGCGGTCATC GTATCGGAAG TAGCAGGAAC ACTCTCTTTC
GAAGGTGTAG TGGAGAATGT AACTTTCAAG ATGGAAAGCG ACGAGACGAC CGGTCTGAAA
GAAAAGATTA TCATCGAATC CAAGGATAAG ACGATGGCTC CCTATGCTCG AATAATAGAC
GAGAATGGAG AGATGCTCAA GAACTATAGT CTCCCGATGG GTGCCCACGT TGTGAAAGAC
GATGGCGACA CAGTCAAAGT TGGCGAGATT TTGGTGAAGA TTCCTCGATC AGTGGGAAAA
GCCGGTGACA TTACCGGTGG TTTGCCTCGT GTCACCGAGC TATTCGAAGC ACGAAATCCG
TCGAATCCCG CGATCGTTTC CGAAATCGAT GGGGAAATCG GCTTTGGCAA GTTGAAACGA
GGAAACCGTG AGATCACTGT TACCTCCAAG CTGGGTGAAG AGAAAAAATA TCTAATCCCC
TTGTCCAAGC AGCTTCTTGT CCAAGAAAAC GACTTCGTTC GTGCAGGAAC ACCGCTTTCT
GACGGAGCTA TTACTCCGGC TGATATTCTG GCAATCAAAG GTCCCACGGC AGTACAGGAG
TACATCGTCA ATGAAGTACA AGACGTGTAT AGGCTTCAGG GTGTGAAGAT CAATGATAAG
CACTTCGAAG TTATTGTTCG CCAGATGATG CGCAAGGTTG AAATTGTCGA TCCGGGTGAC
ACCCTCTTCC TCGAACAGCA GGTAGTCGAT AAGTTCGAAG TAATGGAAGA GAACGATCGC
ATCTGGGGTA AGAAGGTAGT TATTGATGCC GGAGATAGCC AAGTGCTGAA AGCCGGACAG
ATTGTTACGG CACGCAAGCT CCGTGATGAG AACAGTATGC TCAAGCGTAA GGATCTCAAG
ATCGTGAAAG TGCGCGATGC CAAGTCAGCT ACTGCCAGCC AGATACTCCA AGGTATTACC
CGTGCGGCAC TGCAGACCAA GAGCTTCATG TCCGCGGCCT CTTTCCAAGA GACAACCAAG
GTGCTGAATG AAGCAGCTAT CTGTGGTAAG ACTGACTACC TGGAAGGACT GAAGGAAAAC
GTTATCTGCG GTCACCTCAT TCCGGCCGGT ACTGGTTTGC GCGATTACGA GAAGCTCGTC
GTTATGCATC GTGACGATTA CGAAAAGGCG ACAGCCGAGC GTAAGAGTTT CCTTTCCGTG
CCCACAGCCG AACCGGCAAT GGAAGAAGCA CCATCGGAAT AG
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| Protein sequence | MAFRKENKIK NNFSKIRITL ASPEEILENS FGEVLKPETI NYRTYKPERD GLFCERIFGP
VKDFECHCGK YKRIRYRGIV CDRCGVEVTE KKVRRERMGH IHLVVPVAHI WYFRSLPNKI
GYLLGLPTKK LDAIIYYERY VVIQPGVAEG LSQLDLLSEE EYLDKLDEIE RTHKGNQNLE
DTNPDKFIAK IGAEAIYDLL CRVDLDSISY ELRDRANTDG SQQRKTEALK RLQVVESFRA
SKGVNRPEWM VMKVIPVIPP DLRPLVPLDG GRFATSDLND LYRRVIIRNN RLKRLIEIKA
PEVILRNEKR MLQEAVDSLF DNSRKSSAVK SDNNRPLKSL SDSLKGKQGR FRQNLLGKRV
DYSARSVIVV GPELKMHECG LPKDMAAELY KPFIIRKLIE RGIVKTVKSA KKIVDRKEPV
IWDILEYVMK GHPVLLNRAP TLHRLGIQAF QPKLIEGKAI QLHPLSCTAF NADFDGDQMA
VHLPLSNEAI LEAQLLMLAS HNILNPANGA PITVPSQDMV LGLYYITKLR PNTKGHGLIF
YGPEEATIAY NEGKVDIHAP IKVYVEDYEN GELVRRMVET SVGRLMVNEY VPKKVGYVNE
VLGKKALRDI IGSVIKICGV ATTAKFLDDI KNLGYYMAFK GGLSFNLADV LIPDEKDQLI
QEGYTAVEQI MQDYSMGFIT FNERYNQIID TWTHINGRLS NVLIKQLSSD NDGFNSVFMM
MDSGARGSKE QIRQLSGMRG LMAKPQKSGA EGGQIIENPI LSNFKEGLSV LEYFISTHGA
RKGLADTALK TADAGYLTRR LVDVSHDVII TEEDCGTLRG LLTTELKQNE DVVASLYERI
LGRVSVHDII HPTTGDIIVR AGEEIREQAA QIIEDSPIEA VEIRSVLTCE SKKGVCAKCY
GRNLATNRMV QRGEVVGVIA AQSIGEPGTQ LTLRTFHVGG IASNVATENS LLSKYDGILE
FEELRAVDVT DESHQVVVSR MTELRIADPN TGIILANHNI PYGAKLFFRQ GDAVKKGDKI
IEWDPFNAVI VSEVAGTLSF EGVVENVTFK MESDETTGLK EKIIIESKDK TMAPYARIID
ENGEMLKNYS LPMGAHVVKD DGDTVKVGEI LVKIPRSVGK AGDITGGLPR VTELFEARNP
SNPAIVSEID GEIGFGKLKR GNREITVTSK LGEEKKYLIP LSKQLLVQEN DFVRAGTPLS
DGAITPADIL AIKGPTAVQE YIVNEVQDVY RLQGVKINDK HFEVIVRQMM RKVEIVDPGD
TLFLEQQVVD KFEVMEENDR IWGKKVVIDA GDSQVLKAGQ IVTARKLRDE NSMLKRKDLK
IVKVRDAKSA TASQILQGIT RAALQTKSFM SAASFQETTK VLNEAAICGK TDYLEGLKEN
VICGHLIPAG TGLRDYEKLV VMHRDDYEKA TAERKSFLSV PTAEPAMEEA PSE
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