Gene PG0062 details

Gene Information

• Locus tag: PG0062
• ID: 2551802
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Porphyromonas gingivalis W83
• Kingdom: Bacteria
• Replicon accession: NC_002950
• Strand: +
• Start bp: 73828
• End bp: 75870
• Gene Length: 2043 bp
• Protein Length: 680 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 637148875
• Product: TPR domain-containing protein
• Protein accession: NP_904413
• Protein GI: 34539934
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 28
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCTCGTC GCAAGACAAA AAAGAGAGAG GAGGGCCTGT CCGCAATCGA CCTTGCCAAT 
GAGGAGATGG GCTATGTGCT CAGCCTGATC GAACGCACAG ACCAAAGCCT CTTCCTGACC 
GGCAAGGCCG GAACGGGTAA GTCCACACTG CTTCGGCATA TCTGTGCTAC GACGCATAAG 
AAGTTTGTCG TGCTTGCGCC TACCGGCCTT GCGGCACTGA ATGTCGGAGG GCAGACGCTC 
CACTCGTTTT TCAAACTGCC TCTTCGCCCG ATTCCGCCGA ACGATCCCGA TTTGAGTACT 
CGTGACAGAC GGGTGTTCGA TGTGTTTCGC TACACGAACG AACACAAGAA ACTGATCCGA 
AGTCTCGATC TGATTATCAT AGACGAGGTG TCCATGGTTC GAGCGGATGT CATCGACGCC 
ATCGATAAGC TCCTCGGTAT ATACAGAGGC CGGCAAGAAA GGCCTTTCGG CGGTGTGCAG 
ATGTTGTTCG TGGGAGATCT TTATCAGCTT GAACCTGTGG TAACGGCAGA TGATGCCGAC 
ATACTGAAAC GATTTTATCC CAACCCCTTC TTTTTCTCTT CCGAGGCACT GCGAGCAACC 
CCTCCCGTCA CAGTGGAGCT GACCAAGGTG TATCGACAGA CAGAGCAAGC ATTCGTGCAG 
ATACTCGATC GAATCCGATC GGGCAGGCTT ACCGAACAGG ATCTTCAGGA CATCAATAAA 
TGTGTCAATC GCCATTACGA GCCGCCGAAG GACGAACCGG TCATCACACT TGCCACCAAA 
CGCCGGCACG TGAGTTACAT CAATGAGCGG CAATTGGAAC AGCTGCAGGG CGACCCCGTC 
ACCCTGTACG GCACTATCGA AGGCGATTTT CCCTCCTCAT CCTTGCCGAC AGAGGAGGAA 
CTTACACTGA AGCAGGATGC TCAGGTGATA TTCGTCTCCA ACGACAAAGA TCGTCGATGG 
GTCAATGGAA CACTCGGCAT AGTAGCCGGT TTCGATCAGG AGAGTGAAAC GATAGATGTA 
TGTCTCAGCA CCGGAGAAGT TGTAACGGTG GAACCATGCA TCTGGGACAA TAAACGCTTC 
TCCTATAATG AGCAAGCCAA TAAAGTGGAG GAGGAAGTAC TGGGAAGATT CGTTCAGTAT 
CCGCTCAAAT TGGCTTGGGC GATCACGGTA CACAAGAGCC AGGGACTGAC GTTCGATCGT 
GTGATCATCG ATTTCTCGGA AGGCACCTTT GCCGGCGGTC AGGCCTATGT AGCTCTCAGC 
CGGTGTCGTT CGCTCGAAGG TATGGTGCTG CGTGCACCGC TTGCCGGTCG GGATGTGATC 
GTCCGTCGTG AGATCATCGA TTTTTATTCG CGAGCCAATG ATTTGGAGAT CATCAATGGC 
TCACTCCTGC GTGCCGAAGC AGAACGCGAG TATGCACAAG CCCTCCGACT GTGGAATGCT 
CGCCATTATA CGGAAGCCAT CGGTGCCTTT TCGCAGGCAT TAGCGAGGAA GAACGAATTG 
GACGACCCGC TCTTTCGTCG CCTGCTGGTG AGTAAGCTGT TCGAAATGGA GTACGCACGC 
CGTCGCGAGG AAGAGCTGCG TCGCGAGTTG GCCGAGCAAC GCGAGGTTAT GCGTCGGCTG 
GCCAAAGAAT ATGTGCTGAT GGGCAATGAC TGTATCACAG AGGCTCATGA TGCCCATGCT 
GCTATTCGCT GCTACGACAA GGCCCTTACG CTCTACCCCG ACTATGTGGA AGCCTTAGTC 
AGGAAAGGCA AGACATTAGC CGGGCTGAAT GAGATAACCA CTTCCCTCTC CACCTTGAAC 
CAAGCCATAG CCATTGCTCC GATGGACTTT ACTGCCAGAT TCACATTGGG ACAAGTCTTG 
GAGAAATTCG CTTACTATGA AGAAGCCCTC GATGCGTACC GACAAGCTGA TGGACTCAAC 
TCCCAAAGTC GCTCATTGCT CAAACGGCTC ATTGCCCTCT GCGAGGAGCT GGACGAAGAA 
GACGAAGCCA ATCTCTACCG AATCCGCCTA CGCAAAAACC GAGATCAGAC CGGACATAAA 
TAA 

 

Protein sequence

MPRRKTKKRE EGLSAIDLAN EEMGYVLSLI ERTDQSLFLT GKAGTGKSTL LRHICATTHK 
KFVVLAPTGL AALNVGGQTL HSFFKLPLRP IPPNDPDLST RDRRVFDVFR YTNEHKKLIR 
SLDLIIIDEV SMVRADVIDA IDKLLGIYRG RQERPFGGVQ MLFVGDLYQL EPVVTADDAD 
ILKRFYPNPF FFSSEALRAT PPVTVELTKV YRQTEQAFVQ ILDRIRSGRL TEQDLQDINK 
CVNRHYEPPK DEPVITLATK RRHVSYINER QLEQLQGDPV TLYGTIEGDF PSSSLPTEEE 
LTLKQDAQVI FVSNDKDRRW VNGTLGIVAG FDQESETIDV CLSTGEVVTV EPCIWDNKRF 
SYNEQANKVE EEVLGRFVQY PLKLAWAITV HKSQGLTFDR VIIDFSEGTF AGGQAYVALS 
RCRSLEGMVL RAPLAGRDVI VRREIIDFYS RANDLEIING SLLRAEAERE YAQALRLWNA 
RHYTEAIGAF SQALARKNEL DDPLFRRLLV SKLFEMEYAR RREEELRREL AEQREVMRRL 
AKEYVLMGND CITEAHDAHA AIRCYDKALT LYPDYVEALV RKGKTLAGLN EITTSLSTLN 
QAIAIAPMDF TARFTLGQVL EKFAYYEEAL DAYRQADGLN SQSRSLLKRL IALCEELDEE 
DEANLYRIRL RKNRDQTGHK