| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5413 |
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| Symbol | atpD |
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| ID | 1042005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 6175210 |
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| End bp | 6176586 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637148811 |
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| Product | F0F1 ATP synthase subunit beta |
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| Protein accession | NP_747513 |
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| Protein GI | 26992088 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0055] F0F1-type ATP synthase, beta subunit |
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| TIGRFAM ID | [TIGR01039] ATP synthase, F1 beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00278532 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTAGCG GACGTATCGT TCAAATCATC GGCGCCGTCA TCGACGTGGA ATTCCCACGT
GACGTCGTGC CGAGTGTATA CAACGCGCTT AAAGTACAAG GCGCGGAAAC CACCCTGGAA
GTTCAGCAGC AGCTGGGCGA CGGCGTGGTT CGTACCATTG CGATGGGCTC GACCGAAGGC
CTGAAGCGCG GTCTGGATGT CGTCGACACC GGCGCTGCCA TTTCCGTTCC AGTTGGTAAG
GCCACCCTGG GCCGTATCAT GGACGTACTG GGCAACCCGA TCGACGAAGC CGGCCCGATC
GGCGAAGAAG AGCGTCGCGG TATCCACCAG CCAGCGCCTT CGTTCGCTGA CCAGGCAGGC
GGCAACGACC TGCTGGAAAC CGGCATCAAG GTTATCGACC TGGTTTGCCC GTTCGCCAAG
GGTGGTAAGG TTGGTCTGTT CGGTGGTGCC GGTGTCGGCA AGACCGTAAA CATGATGGAA
CTGATCCGTA ACATCGCCAT GGAACACAGC GGTTACTCCG TGTTCGCTGG TGTGGGTGAG
CGTACTCGTG AGGGTAACGA CTTCTACCAC GAGATGAAGG ACTCCAACGT TCTCGACAAA
GTAGCGCTGG TCTACGGTCA GATGAACGAG CCACCAGGAA ACCGTCTGCG TGTAGCGCTG
ACCGGCCTGA CCATGGCCGA GAAGTTCCGT GACGAAGGTA ACGACGTTCT GCTGTTCGTC
GACAACATCT ATCGTTACAC CCTGGCCGGT ACCGAAGTAT CCGCACTGCT GGGCCGTATG
CCTTCGGCAG TAGGTTACCA GCCGACCCTG GCTGAAGAGA TGGGCGTTCT GCAAGAGCGC
ATCACCTCCA CCAAGGAAGG TTCGATCACC TCCGTACAGG CCGTATACGT ACCTGCGGAC
GACTTGACCG ACCCGTCGCC AGCGACCACC TTCGCCCACT TGGACGCCAC CGTCGTTCTG
TCCCGTGACA TCGCCTCCCT GGGTATCTAC CCAGCGGTCG ACCCACTGGA CTCGACTTCG
CGCCAGCTGG ACCCGAACGT GATCGGCAAC GAGCACTACG AGACCGCTCG TGGCGTTCAG
TATGTTCTGC AGCGCTATAA AGAGCTGAAG GACATCATTG CGATCCTGGG TATGGACGAA
CTGTCCGAAG CCGACAAGCA ACTGGTAGCC CGCGCTCGTA AGATCCAGCG CTTCCTGTCG
CAGCCGTTCT TCGTGGCAGA AGTCTTCACC GGTTCGCCAG GCAAGTACGT TTCCCTGAAA
GACACCATCG CTGGCTTCAG CGGCATCCTC AAAGGTGACT ACGACCACCT GCCAGAACAA
GCGTTCTACA TGGTCGGCAG CATCGACGAA GCGATCGAGA AAGCCAAGAA ACTGTAA
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| Protein sequence | MSSGRIVQII GAVIDVEFPR DVVPSVYNAL KVQGAETTLE VQQQLGDGVV RTIAMGSTEG
LKRGLDVVDT GAAISVPVGK ATLGRIMDVL GNPIDEAGPI GEEERRGIHQ PAPSFADQAG
GNDLLETGIK VIDLVCPFAK GGKVGLFGGA GVGKTVNMME LIRNIAMEHS GYSVFAGVGE
RTREGNDFYH EMKDSNVLDK VALVYGQMNE PPGNRLRVAL TGLTMAEKFR DEGNDVLLFV
DNIYRYTLAG TEVSALLGRM PSAVGYQPTL AEEMGVLQER ITSTKEGSIT SVQAVYVPAD
DLTDPSPATT FAHLDATVVL SRDIASLGIY PAVDPLDSTS RQLDPNVIGN EHYETARGVQ
YVLQRYKELK DIIAILGMDE LSEADKQLVA RARKIQRFLS QPFFVAEVFT GSPGKYVSLK
DTIAGFSGIL KGDYDHLPEQ AFYMVGSIDE AIEKAKKL
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