| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5410 |
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| Symbol | |
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| ID | 1042019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 6172295 |
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| End bp | 6173071 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637148808 |
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| Product | DeoR family transcriptional regulator |
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| Protein accession | NP_747510 |
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| Protein GI | 26992085 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.378654 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00216246 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGAAAC GAAACACACC ACAACGGCGA CACAATATTC TGGCTCTGCT CAGCGAGCAG
GGTGAGGTAA GTGTGGACGC GTTGGCCAAG CGTTTCGCCA CCTCGGAAGT GACCATTCGC
AAAGACCTCG CCGCCTTGGA AACCAACGGC TTGTTGTTAC GCCGCTACGG TGGTGCTGTG
CCGGTACCGC AAGAGTTGCT CGGTGAACCG GCACAACCCG TCTCTTCCTA TAAAAAGGCC
ATTGCGCGTG CCGCCGTGGG GCGTATCCGC GAACATGCGC GCATTATCAT CGACAGCGGC
AGCACCACGG CGGCAATGAT CCCCGAACTG GGGCGCCAGC CAGGCCTGGT GGTGATGACC
AATTCGCTCA ATGTGGCCCG TGCAATCTGC GACCTCGAAC ACGAGCCGGT GCTGCTGATG
ACCGGTGGCA CCTGGGACCC GCATTCCGAA TCGTTCCAGG GCCAGGTCGC GGAGCAGGTA
CTGCGCTCCT ACGATTTCGA CCAATTATTC ATCGGCGCCG ACGGCATCGA CCTGGGCCGG
GGTACCACTA CCTTCAACGA GTTGCTTGGG CTGAGCCGGG TCATGGCGGA AGTTGCCCGT
GAAGTGATCG TGATGGTCGA GTCGGACAAG GTGGGGCGCA AGATCCCTAA CCTCGAGCTG
CCCTGGGGCA GTGTGCACAC CCTTATTACA GATGAACGCC TGCCAGCAGC AGCGCGCGAA
CAAATTCAAG CCCGCGGCAT CAACCTGATC TGCGCCGCGA TCAGCCAGGA GCAATAA
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| Protein sequence | MSKRNTPQRR HNILALLSEQ GEVSVDALAK RFATSEVTIR KDLAALETNG LLLRRYGGAV
PVPQELLGEP AQPVSSYKKA IARAAVGRIR EHARIIIDSG STTAAMIPEL GRQPGLVVMT
NSLNVARAIC DLEHEPVLLM TGGTWDPHSE SFQGQVAEQV LRSYDFDQLF IGADGIDLGR
GTTTFNELLG LSRVMAEVAR EVIVMVESDK VGRKIPNLEL PWGSVHTLIT DERLPAAARE
QIQARGINLI CAAISQEQ
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