| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5387 |
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| Symbol | |
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| ID | 1042073 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 6140255 |
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| End bp | 6143413 |
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| Gene Length | 3159 bp |
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| Protein Length | 1052 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637148786 |
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| Product | CzcA family heavy metal RND efflux protein |
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| Protein accession | NP_747488 |
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| Protein GI | 26992063 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.134582 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGAAA AACTGATTCG TTGGTCAGTG AGCAATCGCA TGCTGGTTCT GCTCGCCACC
TTGTTCCTGA TGGCCTGGGG GATATTTTCG CTGCGCAGCC TGCCGATCGA TGCCCTGCCG
GATTTGTCAG ACGCCCAAGT GATCATCCGC ACCTCCTACC CAGGACAAGC ACCTCAGATC
GTCGAAAACC AGGTCACCTA CCCGCTGACC ACCACCATGC TATCGGTGCC GGGAGCCAAG
ACCGTGCGGG GCTTTTCCGC CTTCGGCGAC AGCTTCGTTT ATGTGATTTT CGAAGATGGC
ACGGATCTGT ACTGGGCGCG CTCCCGCGTG TTGGAGTACC TCAGCCAGGT TCAGTCACGC
CTACCCGCAA CGGCCAAGCC AGCACTCGGG CCGGACGCCA CAGGCGTTGG TTGGATCTAC
CAGTACGCGT TGGTCGACCG CAGTGGTAGG CATGATCTGG CACAACTGCG GAGCCTGCAG
GATTGGTTCC TGCGCTTTGA GCTCAAGACC GTGCCGGACG TCGCCGAAGT GGCAAGCATT
GGCGGCATGG TTAAGCAATA CCAGGTGGTA CTCGACCCGC TGCGCATGGC CAGCCTCGGC
ATCACCCAGG GCGAGGTCGC AAACGCCATC GGTAAGGCCA ATCAGGAAAC AGGCGGTGGC
GTGCTGGAAC AGGGCGAGGC GGAGTTCATG GTGCGGGCCT CGGGCTACCT GAAGACACTG
GACGACTTTC GCGCCATCCC CCTGCGCCTG GCTGCCAACG GTGCACCGGT GATGCTGGGC
GACGTTGCCA GAGTACAGCT CGGACCGGAA GCCCGACGGG GTATCGGAGA GCTGGACGGC
GAAGGCGAAG CCGTGGGTGG TGTGGTGATC CTGCGCAGTG GCAAGAATGC CCGGGAAGCC
ATCACCCATG TGAAGGATAA ACTCGAAACA CTGAAGAAGA GCCTGCCCGC CGGCGTCGAG
CTGGTGACTA CCTATGATCG CAGCCAATTG ATCGACCGCG CCGTGGACAA CCTCAGTCAC
AAGCTGATCG AGGAGTTCAT CGTGGTCGCA CTGGTGTGTG CCGCCTTCCT GTGGCACCTG
CGCTCGTCGC TGGTTGCAAT CGTGTCATTG CCGGTGGGAG TACTGATCGC GCTCATCATC
ATGCGGCACC AGGGCATCAA CGCCAACATC ATGTCTCTGG GCGGCATCGC CATCGCCATT
GGCGCAATGG TCGATGCCGC TGTGGTGATG ATCGAGAACG CGCATAAACG GGTTGAAGCT
TGGCACGCCC GTTATCCTGG GCAGGTTCTG CGTGGTGCCG AGCACTGGCG GGTCATGACA
GATGCGGCGG TGGAGGTCGG CCCGGCGCTG TTCTTCAGCC TGATGATCAT CACTCTGTCG
TTCGTGCCGG TGTTCACCTT GCAGGCCCAA GAGGGACGGC TGTTCGCACC CTTGGCGTTC
ACCAAGACCT ATGCCATGGC GGCAGCGGCG GGGCTGGCAG TGACATTGGT GCCGGTGCTG
ATGGGCTACT GGATCCGTGG GCCATTGCCT GCTGAAGAGC GCAACCCACT CAACCGCGGG
CTGATTCGCG TGTACCGCCC AGCGTTGGAG GTAGTGCTGC GCCGGCCGTG GATGACGCTA
CTAGGCGCAT TAGCAATCTT GCTCAGCAGC CTGTGGCCAT TGAGCCACCT GGGTGGGGAA
TTCTTGCCAC CGCTGGACGA AGGTGACCTG CTGTATATGC CCTCGGCCCT ACCTGGCCTG
TCGGCGCAAA AGGCCTCGGA GCTGCTGCAG CGCACCGATC GACTGATCCG CACGGTGCCG
GAGGTCGCCA GTGTGTTCGG CAAAGCCGGT CGCGCAGAGT CAGCTACCGA CCCGGCACCG
TTGGAGATGT TCGAGACCAT TGTGCGGCTC AAGCCCAAGG ATCAGTGGCG GCCTGGAATG
AGCAGCGAGA AACTGGTCGA GGAACTCGAC CGTACCGTAC GCGTACCGGG CCTGACCAAC
ATCTGGATTC CGCCGATCCG CAACCGTATC GACATGCTCG CCACTGGAAT CAAGAGCCCG
ATTGGCGTAA AGGTGGCCGG CAGCGACCTG GCGCAGATCG ACCACACGAC CCTGGCCATC
GAACGGGTAG CCAAGTCTGT ACCTGGCGTG ACCTCGGCAC TGGCCGAGCG TTTGACCGGC
GGGCGTTACG TCGATCTCGA CATCGACCGC CAAGCTGCTG CCCGTTACGG CCTGAACATC
GCCGACGTGC AAGCCATTGT CGCCGGCGCC ATTGGTGGCG AAACCATTGG TGAGACTGTG
GAAGGTTTGG CGCGCTACCC GATCAGCGTG CGCTACCCCC GTGAATGGCG CGATTCTGTC
GACGCCTTGC GGCAGCTCCC GGTCTACACC GCACAAGGGG GCCAGATTAC CCTCGGCACC
GTGGCCCGCG TGGGAATTGC CGAAGGCCCG CCAATGCTCA AGAGCGAGAA CGCCCGCCCC
TCTGGCTGGG TGTACATCGA TGTACGCGGG CGTGATCTGT CGTCTGTAGT CGCTGACCTC
CGTCGGGCAG TTGACCGCGA AGTGAAGCTA AATCCTGGCA TGAGCCTGAG CTACTCAGGG
CAGTTCGAGT ACCTGGAACG CGCCAACGCA CGGCTGGCCT GGGTGGTGCC GGCGACCCTG
GCGATCATCT TCGTCCTGCT CTACCTGACC TTTGGCCGCA TGGGCGAGGC TCTGCTGATC
ATGGGCACCC TGCCTTTTGC CCTCACCGGC GGTGTGTGGT TGCTGTACCT GATGGGCTTC
AACCTGTCGG TGGCCACCGG CGTTGGCTTC ATTGCTTTGG CCGGGGTCGC GGCGGAGTTT
GGTGTGATCA TGTTGATCTA CCTGAACAAC GCCTGGGCTG AACGGCAAGC CAACAGCGAG
CACACGCAGG ATGCGCTACT GGAGGCAATT CGCGAGGGCG CGGTGCAACG CATCCGACCG
AAGGCGATGA CGGTGGCAGT TATCGTTGCA GGCTTGCTAC CCATTCTTTG GAGCAACGGA
ACCGGCAGCG AAGTGATGAG CCGCATCGCC GTACCGATGG TTGGGGGAAT GCTGACCGCA
CCGTTGCTCT CTCTCTTCGT GATTCCCGCA GCGTATTGGC TGGTCCGACG CCGCGATCTT
GTAGTACCTC ATAATTCCAC ACCAGGAGAC ATCCGATGA
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| Protein sequence | MIEKLIRWSV SNRMLVLLAT LFLMAWGIFS LRSLPIDALP DLSDAQVIIR TSYPGQAPQI
VENQVTYPLT TTMLSVPGAK TVRGFSAFGD SFVYVIFEDG TDLYWARSRV LEYLSQVQSR
LPATAKPALG PDATGVGWIY QYALVDRSGR HDLAQLRSLQ DWFLRFELKT VPDVAEVASI
GGMVKQYQVV LDPLRMASLG ITQGEVANAI GKANQETGGG VLEQGEAEFM VRASGYLKTL
DDFRAIPLRL AANGAPVMLG DVARVQLGPE ARRGIGELDG EGEAVGGVVI LRSGKNAREA
ITHVKDKLET LKKSLPAGVE LVTTYDRSQL IDRAVDNLSH KLIEEFIVVA LVCAAFLWHL
RSSLVAIVSL PVGVLIALII MRHQGINANI MSLGGIAIAI GAMVDAAVVM IENAHKRVEA
WHARYPGQVL RGAEHWRVMT DAAVEVGPAL FFSLMIITLS FVPVFTLQAQ EGRLFAPLAF
TKTYAMAAAA GLAVTLVPVL MGYWIRGPLP AEERNPLNRG LIRVYRPALE VVLRRPWMTL
LGALAILLSS LWPLSHLGGE FLPPLDEGDL LYMPSALPGL SAQKASELLQ RTDRLIRTVP
EVASVFGKAG RAESATDPAP LEMFETIVRL KPKDQWRPGM SSEKLVEELD RTVRVPGLTN
IWIPPIRNRI DMLATGIKSP IGVKVAGSDL AQIDHTTLAI ERVAKSVPGV TSALAERLTG
GRYVDLDIDR QAAARYGLNI ADVQAIVAGA IGGETIGETV EGLARYPISV RYPREWRDSV
DALRQLPVYT AQGGQITLGT VARVGIAEGP PMLKSENARP SGWVYIDVRG RDLSSVVADL
RRAVDREVKL NPGMSLSYSG QFEYLERANA RLAWVVPATL AIIFVLLYLT FGRMGEALLI
MGTLPFALTG GVWLLYLMGF NLSVATGVGF IALAGVAAEF GVIMLIYLNN AWAERQANSE
HTQDALLEAI REGAVQRIRP KAMTVAVIVA GLLPILWSNG TGSEVMSRIA VPMVGGMLTA
PLLSLFVIPA AYWLVRRRDL VVPHNSTPGD IR
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