Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_5350 |
Symbol | |
ID | 1042117 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 6098212 |
End bp | 6099078 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637148749 |
Product | RpiR family transcriptional regulator |
Protein accession | NP_747451 |
Protein GI | 26992026 |
COG category | [K] Transcription |
COG ID | [COG1737] Transcriptional regulators |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.767126 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00410686 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | GTGAATCTGT TGCAACATAT CGCCCAATCG CGCCACTTGC TGCGCAAATC GGAACTGAAA GTGGCCGACC ACGTGCTGCT CGACCCGGCT GCCGTCATGC ACAGCTCCAT GGCCGATTTG GCGCACAGCG TGGGTATCAG TGAGCCGACC ATCGTGCGTT TCTGCCGGGC CATTGGCTGC TCGGGCTTCC AGGACCTGAA GCTGAAGCTG GCGCAAAGCC TGGCTGCCGG GGCCAGCTTC GGTCAGTTCG CCATCCACGA AGACGATTCG GTCGCCGACT ACAGCCTGAA GATCTTCGAC ACCACCCTGC ACACCCTGAT GGAAGTGCGC GAGCACCTTG ATCCGCAGGC GCTGCAACAA GCCGTGAGCG CCATGGCCCA GGCGCAGCGG GTAGAGTTCT ATGGCTTTGG CGCGTCCGGT GCGGTTGCGG CCGATGCCCA GCACAAGTTC TTCCGCCTGC TGCTCAGCGC GGCAGCGTAT TCCGACCCCC ACATGCAAGC GATGTCGGCC GTTACCCTGA AACCGGGCGA TGTGGCGGTG TGTATTTCCC AGTCGGGCCG TTCCAAGGAC CTGCTGATCA CTGCCAACCT GGTGCGTGAG AGCGGCGCCA ACCTGATTAC CCTGTGCCCC AGCCAGACGC CGCTGGCCGA GCTATCGACG GTCAACCTGG CGATCGACGT GCATGAAGAC ACCGAGATCT ACACCCCACT GACCTCGCGT ATTGCCCACC TGGTGGTGAT CGACGTGCTG GCCATGGGCG TTGCCATGGC GCGCGGGCCT AGCCTGGTCA ACCACCTGAA GAGCGTGAAA CGCAGCTTGC GCAGCTTGCG TCTGTCGCCC AAGTCGATCA AGGCTACCGA CGACTGA
|
Protein sequence | MNLLQHIAQS RHLLRKSELK VADHVLLDPA AVMHSSMADL AHSVGISEPT IVRFCRAIGC SGFQDLKLKL AQSLAAGASF GQFAIHEDDS VADYSLKIFD TTLHTLMEVR EHLDPQALQQ AVSAMAQAQR VEFYGFGASG AVAADAQHKF FRLLLSAAAY SDPHMQAMSA VTLKPGDVAV CISQSGRSKD LLITANLVRE SGANLITLCP SQTPLAELST VNLAIDVHED TEIYTPLTSR IAHLVVIDVL AMGVAMARGP SLVNHLKSVK RSLRSLRLSP KSIKATDD
|
| |