Gene PP_5350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_5350 
Symbol 
ID1042117 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp6098212 
End bp6099078 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content63% 
IMG OID637148749 
ProductRpiR family transcriptional regulator 
Protein accessionNP_747451 
Protein GI26992026 
COG category[K] Transcription 
COG ID[COG1737] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.767126 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00410686 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAATCTGT TGCAACATAT CGCCCAATCG CGCCACTTGC TGCGCAAATC GGAACTGAAA 
GTGGCCGACC ACGTGCTGCT CGACCCGGCT GCCGTCATGC ACAGCTCCAT GGCCGATTTG
GCGCACAGCG TGGGTATCAG TGAGCCGACC ATCGTGCGTT TCTGCCGGGC CATTGGCTGC
TCGGGCTTCC AGGACCTGAA GCTGAAGCTG GCGCAAAGCC TGGCTGCCGG GGCCAGCTTC
GGTCAGTTCG CCATCCACGA AGACGATTCG GTCGCCGACT ACAGCCTGAA GATCTTCGAC
ACCACCCTGC ACACCCTGAT GGAAGTGCGC GAGCACCTTG ATCCGCAGGC GCTGCAACAA
GCCGTGAGCG CCATGGCCCA GGCGCAGCGG GTAGAGTTCT ATGGCTTTGG CGCGTCCGGT
GCGGTTGCGG CCGATGCCCA GCACAAGTTC TTCCGCCTGC TGCTCAGCGC GGCAGCGTAT
TCCGACCCCC ACATGCAAGC GATGTCGGCC GTTACCCTGA AACCGGGCGA TGTGGCGGTG
TGTATTTCCC AGTCGGGCCG TTCCAAGGAC CTGCTGATCA CTGCCAACCT GGTGCGTGAG
AGCGGCGCCA ACCTGATTAC CCTGTGCCCC AGCCAGACGC CGCTGGCCGA GCTATCGACG
GTCAACCTGG CGATCGACGT GCATGAAGAC ACCGAGATCT ACACCCCACT GACCTCGCGT
ATTGCCCACC TGGTGGTGAT CGACGTGCTG GCCATGGGCG TTGCCATGGC GCGCGGGCCT
AGCCTGGTCA ACCACCTGAA GAGCGTGAAA CGCAGCTTGC GCAGCTTGCG TCTGTCGCCC
AAGTCGATCA AGGCTACCGA CGACTGA
 
Protein sequence
MNLLQHIAQS RHLLRKSELK VADHVLLDPA AVMHSSMADL AHSVGISEPT IVRFCRAIGC 
SGFQDLKLKL AQSLAAGASF GQFAIHEDDS VADYSLKIFD TTLHTLMEVR EHLDPQALQQ
AVSAMAQAQR VEFYGFGASG AVAADAQHKF FRLLLSAAAY SDPHMQAMSA VTLKPGDVAV
CISQSGRSKD LLITANLVRE SGANLITLCP SQTPLAELST VNLAIDVHED TEIYTPLTSR
IAHLVVIDVL AMGVAMARGP SLVNHLKSVK RSLRSLRLSP KSIKATDD