Gene PP_5332 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_5332 
Symbol 
ID1042133 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp6080048 
End bp6080944 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content63% 
IMG OID637148731 
Productaldose 1-epimerase 
Protein accessionNP_747433 
Protein GI26992008 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0676] Uncharacterized enzymes related to aldose 1-epimerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0046695 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTACCT TTCAGGTCGT AACCGAGCAA CATGGCGAAC TCAACTGCTG GCGTATCAGC 
AGTGACCGTG CCGAACTCCT GATCGCCCAG CAGGGCGCAC AGGTCCTCAG CTACCAGCAG
GTAGGCGAAC CGCCGCTGCT GTGGCTGAGC GACCAGGCCA TCTTCCGCCA GGGCAAGTCG
GTACGCGCCG GGGTACCGGT GTGCTGGCCA TGGTTTGGCA ACCTGCAGCG CAACCCTCAG
GCCGTCCAGG CCATGTACCA GGGAACACCA GCGCCTGCCC ACGGGCTTGC GCGCACGCGT
GACTGGCAAT TGCTGGGTAT CGAGGAAGTG GGCGAAACCC TGCGGATCGA GTTCGAACTG
CCTGAAGCGC AGGGCGACCT GCCCGGTTGG CCCCATGATG TCGAGCTGAA ACTGGTGGTG
GAGATGGGCG CAGAGCTGAA ACTGAGCCTG ACCAGCCGCA ACATGGGCAA TACCCCCGTG
ACCATCAGCC AGGCCCTGCA TAGCTACTTC GCGGTCAGCG ATGTGCGCCA GGCGCGGGTC
GAGGGCGTCG ACGGGCTGGG TTATATCGAA ACCCTGGCGG GCTGGGAACA GCGCCAGCAG
CAGGGGGCAC TGACGTTTGC CGGGGAGACG GACCGGATCT ACCTGAACAC CCCGCAGACC
CTCAGCATCG TCGACCCGCA TTGGAATCGG CGGATTACCT TGACCAGCAG CGGCTCGCGC
TCGGCGGTGA TCTGGAACCC GTGGACCGAG CGGGCCAAGG AGCTGGCGGA CATGGCTGAC
GATGGATGGC AGCGAATGCT GTGCATCGAG ACAGCGAATG TGTGGGATGA CCTGGTGGAG
TTGAAGCCTG GGGCGAGTCA TTCGCTGGGC GTCCAGATCG GTTGTGAAAA TATCTGA
 
Protein sequence
MATFQVVTEQ HGELNCWRIS SDRAELLIAQ QGAQVLSYQQ VGEPPLLWLS DQAIFRQGKS 
VRAGVPVCWP WFGNLQRNPQ AVQAMYQGTP APAHGLARTR DWQLLGIEEV GETLRIEFEL
PEAQGDLPGW PHDVELKLVV EMGAELKLSL TSRNMGNTPV TISQALHSYF AVSDVRQARV
EGVDGLGYIE TLAGWEQRQQ QGALTFAGET DRIYLNTPQT LSIVDPHWNR RITLTSSGSR
SAVIWNPWTE RAKELADMAD DGWQRMLCIE TANVWDDLVE LKPGASHSLG VQIGCENI