| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5314 |
|---|
| Symbol | rubB |
|---|
| ID | 1042189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 6061546 |
|---|
| End bp | 6062694 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637148713 |
|---|
| Product | FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
|---|
| Protein accession | NP_747415 |
|---|
| Protein GI | 26991990 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1251] NAD(P)H-nitrite reductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0540022 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCCC CTGTGGTAAT CATCGGTACC GGCCTTGCGG GCTACAACCT GGCCCGTGAA
TTTCGCAAGC TCGATGCGCA GACGCCGCTG TTGCTGATCA CCGCCGACGA TGGTCGTTCG
TACTCCAAGC CGATGCTTTC CATGGGCTTT GCCAAGCAGA AGGACGCCGA CGGCCTGTGC
ATGGCCGAGG CGGGCGCCAT GGCCGAGCAA TTGAACGCCG AGATCCGTAC CCATACCCGT
ATCAGCGGCA TCGACCCGGG CCACAAGCGG CTGTGGATCG GCGAAGAGGC CGTGGAATAC
CGCGACCTGG TGCTGGCCTG GGGGGCGCAG ACCGTGCAGG TGCCGATCGA GGGTGACGGC
GGCCATCTGG TATTCCCGAT CAACGACCTG GAAGACTACG CACGCTTCCG TGCTGCCGCC
GCTGGCAAGC AGCGTGTACT GATCCTCGGT GCCGGCCTGA TCGGCTGCGA ATTCGCAAAC
GACATGAGCC TGGGCGGCTT CAAGGTCGAC GTTGTGGCGC CGTGTGAACA GATCATGCCG
ACCCTGCTGC ACCCGGCCGC TGCGGCGGCT GTGCAGGGTG GGCTGGAGGG CCTGGGTGTA
CGCTTCCACC TGGGGCCGGT GCTGACCCGT CTTCAGCAGG TGACTCAAGG CCTGGAGGCG
CACTTGTCGG ACGGCAGCGT GATCGCCTGC GACCTGGTGG TTTCGGCCAT CGGCCTGCGC
CCACGTACCG ACCTGGCTGC CGCGGCCGGC CTGCAGACCA ACCGTGGCGT AAGCGTAGAC
CGCGAGCTAC GTACTTCACA CGCCAACATC TTTGCCCTTG GCGACTGTGC CGAAGTCGAT
GGCATCAACC TGCTGTACGT GATGCCGCTG ATGAGCTGTG CCCGGGCGCT GGCGCAAACC
CTGGCCGGGA AGCCGACGGC AGTTTCCTAC GGGCCTATGC CTATCACCGT GAAAACCCCG
GCCTGTCCGG TGGTGGTTTC GCCAGCGCCA CAGGGCTGCG AAGGCATCTG GCAGGTAGAG
GGGCAGGGCA GTGACCTCAA GGTGCTCTGC CTTGATGCCG ACGGCAAGCT GCTGGGCTAC
GCCCTGACCG GAGCGGCGGT GATGGAGAAG CTGGCGCTGA ATCGTCAGTT GCCACCGGTT
ATGGCGTAA
|
|---|
| Protein sequence | MTSPVVIIGT GLAGYNLARE FRKLDAQTPL LLITADDGRS YSKPMLSMGF AKQKDADGLC
MAEAGAMAEQ LNAEIRTHTR ISGIDPGHKR LWIGEEAVEY RDLVLAWGAQ TVQVPIEGDG
GHLVFPINDL EDYARFRAAA AGKQRVLILG AGLIGCEFAN DMSLGGFKVD VVAPCEQIMP
TLLHPAAAAA VQGGLEGLGV RFHLGPVLTR LQQVTQGLEA HLSDGSVIAC DLVVSAIGLR
PRTDLAAAAG LQTNRGVSVD RELRTSHANI FALGDCAEVD GINLLYVMPL MSCARALAQT
LAGKPTAVSY GPMPITVKTP ACPVVVSPAP QGCEGIWQVE GQGSDLKVLC LDADGKLLGY
ALTGAAVMEK LALNRQLPPV MA
|
|---|
| |