Gene PP_5297 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_5297 
Symbol 
ID1042243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp6043673 
End bp6045280 
Gene Length1608 bp 
Protein Length535 aa 
Translation table11 
GC content63% 
IMG OID637148696 
Productamino acid ABC transporter permease 
Protein accessionNP_747398 
Protein GI26991973 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0531] Amino acid transporters 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00229664 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.376722 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAAA GCGAGCCTTG TACCCAAGGC TTGTTAAAAC AATTCCAAAA TTTACGGCAA 
ATACTCATGA GCAATTACAC AGAAGCCGGC CGCCCACCCG ATGTGGCGGC CGACGCGGGC
AACACTCAGC GCAGCAAAGG CCTGGCCAAG GGCCGCTTGG GGCTGCTGGC CAGCGTGGTG
CTGGGCATTT CCACCATCGC CCCGGTCTAT ACCCTGACCG GCGCCCTTGG CCCTACCGTG
CGTGAGGTGG GCGCCCACCT GCCGGCCGTG TTCATCGTGG GCTTCTTGCC GATGCTGCTG
GTGGCCCTGG GCTATCGCGA GCTGAACTCG GCGGAGCCTG ACAGCGGTAC TTCGTTTACC
TGGTCGGCGC GTGCATTCGG CCCGATGATC GGCTGGATCG GCGGCTGGGG ACTGGTGGTT
GCCACCACGA TCGTGCTGTC GAACCTGGCA GGTGTGGCGG TGGATTTCTT CTACCTGTTC
CTTGGCCAGA TCACCGGCAA GCATGAGCTG GCAGCGTTGG CCGACAACCT GTTGATCAAC
ATCGTTACCT GTTGCGTGTT CATTGGCCTG GCAGTGTGGA TCTGCTGTCG GGGTATCGCC
ACCACAATGA CCGTGCAGTA CGGCTTGGTG GCCCTGCAGC TGTTGGTGTT GATCGGCTTT
GCTTTCGCCG CTTTCGGCGG CACTACCGCG CCGCCACCGC TGGCGTTCGA TTTCGCCTGG
TTCAACCCGT TCGGTGTCGA GTCGTTCTCG GCCTTTGCCG CTGGCCTGTC ATTGTCGATC
TTCATCTTCT GGGGCTGGGA CACTTGTCTG ACCGTCAGTG AAGAGTCGGT GGGCAGCGAA
GAGGTGCCGG GCAAGGCCGC TACCTGGACC GTGATGTTGA TCCTGGGCCT GTACCTGTTC
ACCGCCATCG CCACCCTGCA GTTTGCCGGT ATCAGTGAAA CGGGTCTGGG CCTGAACAAC
CCGCGCATCC AGGAGAACGT CTTTGCCCAC CTGGCCGGCC CGGTCATGGG GCCGCTGGCG
ATCCTGATGT CCATCGCCGT GCTGGCCAGT ACGGCGGCGT CGCTGCAGTC CACCTTCGTG
GCGCCGGCGC GCACCCTGTT GGCCATGGGT TATTACGGTG CGGTACCGCA GAAGTTCGCC
AGTGTCTGCC CGCGCTCGCA AACGCCGCGC TATGCCACCA TCTGCGCCGG CCTGGCCGCA
GGCCTGTTCT ACGTGACCAT GCGTACGCTG AGCGAGAACG TGCTGGCAGA TACCATCACG
GCATTGGGCA TGATGATCTG CTTCTACTAT TCGCTGACCG CGTTTGCCTG CGTCTGGTAT
TTCCGCGGCA GCCTGTTCGA CAGCCTGCGC CACTTCATCA TGCGCGGCCT GTGCCCGCTG
CTGGGGGGTG TTATCTTGTC GGTGATCTTC GTGCGCACCG CCATCGACAG TGCTTCGCCG
GACTTTGGCA GCGGCTCGCA TGTGGGCGGG CTGGGGCTGG TGTTCGTGAT TGCCGCGATC
ATCTCGGTGC TTGGCATCGG CCTGATGATG CTGTCGCGCA TGCGTGCGCC GGCGTACTTC
CTCGGGGCTA CCCTGCGTCA GCAGGCTACC TTGCCGCTGC AGGACTAA
 
Protein sequence
MSESEPCTQG LLKQFQNLRQ ILMSNYTEAG RPPDVAADAG NTQRSKGLAK GRLGLLASVV 
LGISTIAPVY TLTGALGPTV REVGAHLPAV FIVGFLPMLL VALGYRELNS AEPDSGTSFT
WSARAFGPMI GWIGGWGLVV ATTIVLSNLA GVAVDFFYLF LGQITGKHEL AALADNLLIN
IVTCCVFIGL AVWICCRGIA TTMTVQYGLV ALQLLVLIGF AFAAFGGTTA PPPLAFDFAW
FNPFGVESFS AFAAGLSLSI FIFWGWDTCL TVSEESVGSE EVPGKAATWT VMLILGLYLF
TAIATLQFAG ISETGLGLNN PRIQENVFAH LAGPVMGPLA ILMSIAVLAS TAASLQSTFV
APARTLLAMG YYGAVPQKFA SVCPRSQTPR YATICAGLAA GLFYVTMRTL SENVLADTIT
ALGMMICFYY SLTAFACVWY FRGSLFDSLR HFIMRGLCPL LGGVILSVIF VRTAIDSASP
DFGSGSHVGG LGLVFVIAAI ISVLGIGLMM LSRMRAPAYF LGATLRQQAT LPLQD