Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_5275 |
Symbol | |
ID | 1042293 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 6023569 |
End bp | 6025059 |
Gene Length | 1491 bp |
Protein Length | 496 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637148674 |
Product | GntR family transcriptional regulator |
Protein accession | NP_747376 |
Protein GI | 26991951 |
COG category | [E] Amino acid transport and metabolism [K] Transcription |
COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.187277 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGTATT TTCAGCCCAA CTGTACCGGT CGCTATGCCA ATGCAGCGCA GGAGTATGCC GTGACCCTCT ACCTGAATCT CGCCGAAATA CTCGGCGCCC GAATCAAGCA GGGCCTCTAT CGCCCTGGCC AGCGCCTGCC GTCCGTGCGC GCACTGAGTG AGGAGCATGG GGTCAGCCTG AGCACCGTGC AGCAGGCCTA TCGCATGCTC GAAGACAGCG GTATGGTCTC GCCGCGGCCC AAGTCCGGCT ACTTCGTCAG CGACCAACGG CAGTTGCCGG CACTGCCCGC AGTCAGCCGC CCGGCCCAGC GCCCGGTGGA CATCTCGCAG TGGGAACAGG TGCTGGAGCT GGTGCGCAGT ACGCCGCGCC AGGATGTGGT GCAACTCGGC CGCGGCATGC CCGACATCGA CAGCCCTACC CTGAAGCCGC TGCTGCGCAG CCTTGCCCAG TTGAGCCGGC GCCAGGACAT GCCTGGCCTG TACTACGACA ACATCCACGG TAACCTGGCC CTGCGCGAAC AGGTGGCCCG GCTGATGCTC GACTCCGGCT GCCGCCTGGG GCCGGCCGAC CTGGTGATTA CCACCGGCTG CCATGAGGCG CTGTCATGCA GCATCCGCGC AGTCTGCGAG CCAGGCGACA TCGTCGCGGT CGACTCGCCC AGCTTCCACG GCGCCATGCA AACCCTCAAG GGCTTGGGCA TGAAAGCGCT GGAAATCCCC ACCGACCCGG TCACCGGCAT CAGCCTGGAG GCGCTGGAGC TGGCCCTGGA GCAGTGGCCG ATCAAGCTCA TTCAGATCAC CCCCAGCTGC AACAACCCGC TGGGCTACAT CATGCCCGAG GCACGCAAGA AGGCCCTGCT GAGCCTCGCC CAACGCTATG ACGTGGCGAT TCTGGAAGAC GATGTGTACG GCGACCTGGC CTATACCTAC CCACGCCCAC GCACCCTGAA GTCGTTCGAC GACGATGGCC GCGTGCTGCT CTGCAGTTCG TTCTCCAAAA CCCTCGCGCC CGGCCTGCGG ATCGGCTGGG TGGCGCCCGG GCGCTACCTG GAGCGCGTGC TGCACATGAA ATACATCAGC ACCGGCAGCA CCGCCAGCCA GCCTCAGCTG GCCATCGCTG ACTTCATCGC AGCCGGGCAC TACCAGCCCC ATGTACGGCG CATGCGCAGC CAGTACCAGC GTGGCCGCGA CCTGATGGGC GACTGGGTGA CCCGCTACTT CCCGGCGGGC ACCCGGGTCA GCCGGCCCCA GGGCGGCTTC ATGCTGTGGG TGGAATTACC CGAACATCTC GATACGCTTC GGCTGAACCG CGCTTTACTG GAGCAGGGCG TGCAGGTTGC CGTGGGCAGC ATCTTTTCGG CCTCGGGCAA GTTTCGCCAC TGCCTGCGCA TGAATTTCGC CGCCAGGCCA ACGCCGCAAA TCGAAGCCTC CGTGCGCAAG GTTGGTGAAA CCGCCCTTCG TCTACTGGAT GACGAAAGCG CCGACGCGTA A
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Protein sequence | MLYFQPNCTG RYANAAQEYA VTLYLNLAEI LGARIKQGLY RPGQRLPSVR ALSEEHGVSL STVQQAYRML EDSGMVSPRP KSGYFVSDQR QLPALPAVSR PAQRPVDISQ WEQVLELVRS TPRQDVVQLG RGMPDIDSPT LKPLLRSLAQ LSRRQDMPGL YYDNIHGNLA LREQVARLML DSGCRLGPAD LVITTGCHEA LSCSIRAVCE PGDIVAVDSP SFHGAMQTLK GLGMKALEIP TDPVTGISLE ALELALEQWP IKLIQITPSC NNPLGYIMPE ARKKALLSLA QRYDVAILED DVYGDLAYTY PRPRTLKSFD DDGRVLLCSS FSKTLAPGLR IGWVAPGRYL ERVLHMKYIS TGSTASQPQL AIADFIAAGH YQPHVRRMRS QYQRGRDLMG DWVTRYFPAG TRVSRPQGGF MLWVELPEHL DTLRLNRALL EQGVQVAVGS IFSASGKFRH CLRMNFAARP TPQIEASVRK VGETALRLLD DESADA
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