| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5252 |
|---|
| Symbol | |
|---|
| ID | 1042338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 5995040 |
|---|
| End bp | 5997022 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637148651 |
|---|
| Product | amidohydrolase 3 |
|---|
| Protein accession | NP_747353 |
|---|
| Protein GI | 26991928 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCAGG ATCGCAACGA CAAGACCCGT CGCCAGTTCC TCGCCACCAG CACTGTGCTT
GGTGCCGCTG GCGCACTCTG GTCCGCATTG CCTTTTACCG GCCAAGCCGG TTCCGCTCAC
GCATCCACGC AAGGAGGTTC CATGACCGCC GACCTGATTC TGTTCAACGG CAAACTGCAC
ACCGTTGACC GAGAAAAGCC CACCGCGACC GCCGTCGCCA TCAAGGACGG CCGCTTCATC
GCCGTGGGCA GCGACGCCGA GGCCATGGCC CACAAGGGTG CCGCCTCGCA GATCATCGAC
CTCAAGCAGC GCACGGTGAT CCCGGGCCTC AATGACTCGC ACCTGCACCT GATCCGTGGC
GGTCTGAACT ACAACCTCGA GCTGCGTTGG GAAGGGGTAC CGTCAGTGGC CGATGCCCTG
CGCATGCTCA AGGACCAGGC TGCGCGCACG CCTACCCCGC AGTGGGTGCG CGTGGTCGGT
GGCTGGAACG AATACCAGTT CGCCGAAAAG CGCATGCCCA CCCTGGAGGA AATCAACCAG
GCCGCACCCG ACACCCCGGT GTTCCTGCTG CACCTGTACG ACCGCGCGTT GCTCAACCGC
GCCGCGCTCA AGGCCGTCGG CTACACCAAG GAAACGCCGA ACCCGCCAGG TGGCGAGATC
CAGCGCGACA AGTTCGGCAA CCCCACCGGC ATGCTGATCG CCCGCCCTAA CGCGATGATC
CTCTACGCCA CGCTGGCCAA GGGGCCTAAG CTGCCGCTGG AGTATCAGGT CAACTCCACT
CGCCAGTTCA TGCGTGAACT CAACCGGCTG GGCCTGACCA GCGCCATCGA CGCCGGCGGC
GGCTACCAGA ACTTCCCCGA CGACTACTCC GTGATCCAGG AGCTGGCCGA CAACGATCAA
TTGACCGTAC GCATCGCCTA CAACCTGTTC ACCCAGAAGC CCAAGGAAGA ACTGGACGAC
TTCAAGAAGT GGACCTCCAG CGTCAAGCTG CACAGCGGTA CCGACTTCTT GCGCCACAAT
GGCGCGGGCG AAATGCTGGT GTTCTCTGCC GCCGACTTCG AGGACTTCCT CGAGCCGCGC
CCGGACCTGC CGCAGACCAT GGAAGAAGAA CTGGAGCCGG TGGTGCGCCA CCTGGTCGAG
CAGCGCTGGC CATTCCGCCT GCACGCCACC TACAACGAAT CGATCACGCG CATGCTCGAC
GTGTTCGAGA AGGTCAACCG CGACATTCCA TTCAACGGCC TGCCCTGGTT CTTCGACCAC
GCCGAAACCA TCACCCCGCA GAACATCGAG CGCGTGCGTG CGCTGGGCGG TGGTATTGCC
ATCCAGGACC GCATGGCCTT CCAGGGTGAG TACTTCGTCG ACCGCTACGG CGCCAAGGCC
GCCGAGCAGA CCCCGCCGAT CAAACGCATG CTCGAGATGG GCGTGCCGGT TGGCGCGGGT
ACCGATGCCA CTCGGGTGTC CAGCTACAAC CCATGGACCT CACTGTACTG GCTGGTCAGC
GGCAAGACGG TCGGTGGCAT GGAGCTGTAC CCGGAAGGCC TGAGCCGTGA CACCGCGCTG
CAACTGTTCA CCCAGGGCAG CGCCTGGTTC TCCAGTGAGC AAGGCAAGAA AGGCCAGATC
AAGGTGGGCC AGCTGGCTGA CCTGGCAGCA TTGTCGCTGG ACTTCTTCAG TGTCGATGAA
GAGGCGATCA AGGGCATCGA GTCGGTGCTG ACCATCGTTG ATGGCAAGGT GGTGTACGGT
GCTGGCGAGT TCGACAAGTT TGGCCCACCG CAGGTGCCGG TGCTGCCGGA GTGGTCGCCG
GTGACCAAGG TGCCTGGGCA CTGGCGTGTC GGTACGCCAT CGTTGGCAGC CGCGGTGCAC
CAGTGCAGCG GGCCTTGTGG TGTGCATGCG CACAGCCACG AAAAGGCGCG GCATTCGAGC
GTGCCGGTAA ATGACTTCCA GGGCTTCTGG GGTGCGCTGG GCTGTTCGTG CTTCGCTTTC
TAA
|
|---|
| Protein sequence | MSQDRNDKTR RQFLATSTVL GAAGALWSAL PFTGQAGSAH ASTQGGSMTA DLILFNGKLH
TVDREKPTAT AVAIKDGRFI AVGSDAEAMA HKGAASQIID LKQRTVIPGL NDSHLHLIRG
GLNYNLELRW EGVPSVADAL RMLKDQAART PTPQWVRVVG GWNEYQFAEK RMPTLEEINQ
AAPDTPVFLL HLYDRALLNR AALKAVGYTK ETPNPPGGEI QRDKFGNPTG MLIARPNAMI
LYATLAKGPK LPLEYQVNST RQFMRELNRL GLTSAIDAGG GYQNFPDDYS VIQELADNDQ
LTVRIAYNLF TQKPKEELDD FKKWTSSVKL HSGTDFLRHN GAGEMLVFSA ADFEDFLEPR
PDLPQTMEEE LEPVVRHLVE QRWPFRLHAT YNESITRMLD VFEKVNRDIP FNGLPWFFDH
AETITPQNIE RVRALGGGIA IQDRMAFQGE YFVDRYGAKA AEQTPPIKRM LEMGVPVGAG
TDATRVSSYN PWTSLYWLVS GKTVGGMELY PEGLSRDTAL QLFTQGSAWF SSEQGKKGQI
KVGQLADLAA LSLDFFSVDE EAIKGIESVL TIVDGKVVYG AGEFDKFGPP QVPVLPEWSP
VTKVPGHWRV GTPSLAAAVH QCSGPCGVHA HSHEKARHSS VPVNDFQGFW GALGCSCFAF
|
|---|
| |