| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5214 |
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| Symbol | rho |
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| ID | 1042415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5947205 |
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| End bp | 5948464 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637148613 |
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| Product | transcription termination factor Rho |
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| Protein accession | NP_747315 |
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| Protein GI | 26991890 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00426874 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTGA CTGAACTCAA GCAAAAGCCG ATTACCGATC TTTTGGAAAT GGCCGAACAG
ATGGGCATCG AAAACATGGC CCGTTCGCGC AAACAGGACG TGATTTTCGC CCTGCTGAAG
AAGCATGCGA AAAGCGGCGA AGAGATCTCG GGTGACGGCG TGCTGGAGAT TCTCCAGGAT
GGTTTCGGTT TCCTGCGTTC GGCTGATGCG TCCTACCTGG CCGGCCCAGA CGATATCTAT
GTCTCGCCCA GCCAGATCCG CCGTTTCAAC CTGCGTACCG GCGACACCAT CGTCGGCAAG
ATCCGCCCAC CGAAGGAAGG GGAGCGTTAC TTCGCCCTGC TGAAGGTCGA TACCATCAAC
TTCGACCGCC CGGAAAACGC GAAGAACAAG ATCCTGTTCG AAAACCTGAC GCCGCTGTTC
CCGAACAAGC GCCTGAAGAT GGAGGCCGGT AACGGCTCCA CCGAGGACTT GACCGGTCGC
GTCATCGACC TGTGCGCCCC GATCGGCAAA GGCCAGCGCG GCCTGATCGT TGCCCCGCCG
AAAGCCGGTA AGACGATCAT GCTGCAGAAC ATTGCGGCCA ACATCACCCG TAACAACCCT
GAGTGCCACC TGATCGTCCT GCTGATCGAC GAGCGCCCGG AAGAAGTGAC CGAAATGCAG
CGCACCGTGC GTGGCGAAGT GGTTGCTTCC ACCTTCGACG AGCCGCCAAC CCGCCACGTG
CAGGTTGCCG AGATGGTGAT CGAGAAGGCC AAGCGCCTGG TCGAGCACAA GAAAGATGTG
GTTATCCTGC TGGACTCGAT CACTCGACTG GCGCGTGCCT ACAACACCGT GATCCCGAGC
TCCGGCAAGG TGCTGACCGG TGGTGTCGAC GCCCACGCCC TCGAGAAGCC CAAGCGCTTC
TTCGGTGCTG CGCGTAACAT CGAGGAAGGC GGTTCGCTGA CCATTATCGC CACTGCGCTG
GTTGAAACCG GCTCGAAGAT GGACGAAGTG ATCTACGAAG AGTTCAAGGG TACCGGCAAC
ATGGAGCTGC CGCTGGACCG CCGCATCGCT GAGAAGCGTG TGTTCCCGGC CATCAACATC
AACCGCTCCG GCACTCGCCG CGAAGAGTTG CTGACCGCTG ACGACGAGCT GCAGCGTATG
TGGATTCTGC GCAAGCTGCT GCACCCGATG GACGAAATCG CTGCCATCGA GTTCCTGGTC
GACAAGCTCA AGCAGACCAA GACCAACGAT GAGTTCTTCC TGTCGATGAA GCGCAAGTAA
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| Protein sequence | MNLTELKQKP ITDLLEMAEQ MGIENMARSR KQDVIFALLK KHAKSGEEIS GDGVLEILQD
GFGFLRSADA SYLAGPDDIY VSPSQIRRFN LRTGDTIVGK IRPPKEGERY FALLKVDTIN
FDRPENAKNK ILFENLTPLF PNKRLKMEAG NGSTEDLTGR VIDLCAPIGK GQRGLIVAPP
KAGKTIMLQN IAANITRNNP ECHLIVLLID ERPEEVTEMQ RTVRGEVVAS TFDEPPTRHV
QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKVLTGGVD AHALEKPKRF
FGAARNIEEG GSLTIIATAL VETGSKMDEV IYEEFKGTGN MELPLDRRIA EKRVFPAINI
NRSGTRREEL LTADDELQRM WILRKLLHPM DEIAAIEFLV DKLKQTKTND EFFLSMKRK
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