| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5213 |
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| Symbol | |
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| ID | 1042398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5945533 |
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| End bp | 5947185 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637148612 |
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| Product | UbiD family decarboxylase |
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| Protein accession | NP_747314 |
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| Protein GI | 26991889 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.354632 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATTGGGG CCGCCTTGCG GCCCTTCGCG GGCAAGCCCG CTCCTGCACA GGTCATTGCG
GCCCTTGTAG GAGCGGGCTT CCGCGAAGGG ATGCAAAGCG GCCCCAATGC ATTTTCACCC
CCAAACAAGG CCCGAACGGC GCTACACTCT GCACCCCGAC CGATACGGCC AACACGAGGC
TCCTGCATGC AGTATCGCGA CTTGCGCGAC TTCATTCGTG GCCTGGAACA GCGCGGCGAG
CTCAAGCGCA TCCAGGTACC GATCTCCCCC GTCCTGGAAA TGACCGAGGT CTGCGACCGC
ACCCTGCGCG CCAAGGGCCC GGCATTGTTG TTCGAAAAGC CCACCGGCTT CGACATCCCA
GTGCTGGGCA ACCTGTTCGG TACCCCGGAG CGGGTGGCCA TGGGCATGGG CGCCGAGTCG
GTCAGCGAAC TGCGGGAAAT CGGCAAGCTG CTGGCCTTCC TCAAGGAGCC TGAGCCGCCC
AAGGGCCTGA AGGACGCCTG GTCGAAGCTG CCGATCTTCA AGAAGGTCGT GTCGATGGCG
CCAAAAGTGG TCAAGGACGC GGTGTGCCAG GAAGTGGTGG TCGAGGGTGA CGATGTCGAC
CTTGGCACGC TGCCGATTCA GCACTGCTGG CCTGGCGACG TGGCGCCGCT GATTACCTGG
GGCCTCACCG TGACCCGTGG CCCGAACAAG GACCGCCAGA ACCTGGGCAT CTACCGCCAG
CAGGTGATCG GCCGCAACAA GGTGATCATG CGCTGGCTCA GCCATCGTGG CGGCGCCCTC
GATTACCGAG AGTGGTGCGA GAAGAACCCC GGCCAGCCGT TTCCGGTCGC CGTGGCCCTG
GGCGCTGACC CAGCGACCAT TCTCGGCGCG GTGACCCCGG TCCCGGACAC CCTTTCCGAG
TACGCCTTCG CCGGCCTGCT GCGAGGCAAT CGCACCGAGC TGGTCAAGTG CCGTGGCAGC
AACCTGCAGG TACCGGCAAC CGCCGAGATC ATTCTGGAAG GGGTGATCCA CCCAGGCGAA
ATGGCCCCGG AAGGCCCTTA CGGCGATCAC ACGGGCTACT ACAACGAAGT GGACAGTTTC
CCGGTGTTCA CCGTTGAGCG CATCACCCAC CGGCAAAAAC CGATCTACCA CAGCACCTAC
ACCGGCCGGC CGCCAGATGA GCCGGCCATT CTCGGCGTGG CGCTGAACGA AGTGTTCGTG
CCGATCCTGC AGAAGCAGTT CCCGGAAATC ACCGACTTCT ACCTGCCGCC GGAAGGCTGC
TCGTACCGCA TGGCGGTGGT GACCATGAAG AAACAGTACC CAGGCCACGC CAAGCGCGTA
ATGCTGGGTG TGTGGTCGTT CCTGCGACAG TTCATGTACA CCAAGTTCGT TATTGTCACC
GATGACGATA TCAACGCTCG TGACTGGAAC GATGTGATCT GGGCCATTAC CACGCGCATG
GACCCCAAGC GTGATACGGT AATGATTGAC AATACCCCGA TCGACTACCT GGACTTTGCG
TCACCGGTGT CGGGGCTGGG TTCGAAGATG GGCCTGGACG CTACGCACAA GTGGCCGGGC
GAGACTACAC GCGAATGGGG CCGGGTCATC GTCAAGGATG AGGCCGTCAC CCGCCGTATC
GATGAGCTGT GGGATCAGTT GGGAATAGAT TGA
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| Protein sequence | MIGAALRPFA GKPAPAQVIA ALVGAGFREG MQSGPNAFSP PNKARTALHS APRPIRPTRG
SCMQYRDLRD FIRGLEQRGE LKRIQVPISP VLEMTEVCDR TLRAKGPALL FEKPTGFDIP
VLGNLFGTPE RVAMGMGAES VSELREIGKL LAFLKEPEPP KGLKDAWSKL PIFKKVVSMA
PKVVKDAVCQ EVVVEGDDVD LGTLPIQHCW PGDVAPLITW GLTVTRGPNK DRQNLGIYRQ
QVIGRNKVIM RWLSHRGGAL DYREWCEKNP GQPFPVAVAL GADPATILGA VTPVPDTLSE
YAFAGLLRGN RTELVKCRGS NLQVPATAEI ILEGVIHPGE MAPEGPYGDH TGYYNEVDSF
PVFTVERITH RQKPIYHSTY TGRPPDEPAI LGVALNEVFV PILQKQFPEI TDFYLPPEGC
SYRMAVVTMK KQYPGHAKRV MLGVWSFLRQ FMYTKFVIVT DDDINARDWN DVIWAITTRM
DPKRDTVMID NTPIDYLDFA SPVSGLGSKM GLDATHKWPG ETTREWGRVI VKDEAVTRRI
DELWDQLGID
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