Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_5192 |
Symbol | gcvP-2 |
ID | 1042488 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 5921548 |
End bp | 5924421 |
Gene Length | 2874 bp |
Protein Length | 957 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637148591 |
Product | glycine dehydrogenase |
Protein accession | NP_747293 |
Protein GI | 26991868 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCAGT CGCCATCCCT GCATCAACTG CAAGAGCTCA ACCCGTTTCT GCGTCGCCAC CTGGGCCCCG ATGCCACAGA GCAGCAGGCC ATGCTCAACG CGCTGGGTAT CGCCAGCCGC AACGAGCTGA TCGAGCAGAC CGTTCCGCCA GACATCCGCC TCAATCGCCC CCTCGACCTC CCAGCGGCAC TGGACGAGCA AGCCGCCCTG GCCAAGCTCG CCGGTTACGC CGAACAGAAC CAGGTCTGGA CCAGCCTCAT CGGCATGGGC TACCACGGCA CCATCACCCC CACGGTCATC CTGCGCAACG TGCTGGAAAA CCCTGGCTGG TACACCGCCT ACACGCCCTA CCAACCCGAA ATTGCCCAAG GCCGGCTGGA GGCGCTGCTG AACTTCCAGC AAATGGTCAT CGACCTCACC GGCCTGCCTC TGGCCAATGC CTCGCTGCTC GATGAAGCCA CCGCTGCCGC CGAAGCCATG GCCCTGGCCA AGCGGGTGGC ACGCAACAAG AGCAACGCCT TCTTTGCCGA CGAGCACTGC CATCCGCAGA CCCTATCGGT ACTCAAGACC CGCGCCGAAG GCTTCGGCTT TGAGCTGATC GTCGATTCTG TGGATAACCT TGCCAAGCAC TCGGTGTTCG GCGCCTTGCT GCAGTACCCG GACACCCACG GCGAAGTGCG CGATTTGCGC CCGCTGATCG ACCAGTTGCA CAGCCAGCAG GCCCTGGCCT GCGTAGCCGC TGACCTGCTG AGCCTGGTGG TGCTGGCACC GCCCGGAGAG CTCGGCGCCG ATGTGGTGCT GGGCTCGACC CAGCGCTTTG GTGTGCCGAT GGGCTACGGC GGGCCTCACG CGGCCTATTT CGCCTGTCGC GACGACTACA AGCGAGCCAT GCCGGGGCGC ATCATCGGCG TATCGCGCGA TGCCCGTGGC AACACCGCAT TACGGATGGC CCTGCAAACC CGCGAGCAGC ATATTCGCCG CGAAAAGGCC AACTCCAACA TCTGCACGGC CCAGGTGCTG TTGGCCAACA TTGCCGGCTT CTACGCGGTG TACCACGGCC CGGAAGGCCT GCAACGCATC GCGCAGCGTG TGCACCGGTT GACCTTCATC CTGGCAGCCG GCCTTGAGGC CAAAGGCATC AAACGCCTCA ATCAGCACTT CTTCGACACC CTTACCCTGA ATGTTGGCGG TGCCCAGGCG GCCATCATTG AAAGCGCCGA GGCCGCGCAC ATCAATTTGC GCATTCTCGG TCGCGGGCAC CTGGGGGTGA GCCTGGACGA AACCTGCACC GAACAGACGG TGCTGCGCCT GCTCGACATC TTCCTGGGGG TGGATCATGG CCTGGAAATC ACCGCCCTCG ACCAGCTGGC CCTGCCTGAA GGCATCCCCG CCAGCCTGGT GCGACGCACG CCATTCCTCG CCCATCCGGT GTTCAACCTG CATCACAGCG AAACAGAGAT GCTGCGCTAC CTCAAGCAGC TAGAGAACAA GGACCTGGCG CTGAACCAGT CGATGATACC GTTGGGCTCG TGCACCATGA AGCTCAACGC CACCAGTGAG ATGATCCCCA TCACCTGGCC CGGTTTTGCC CAGCTGCACC CGTTCGCCCC GGCGGCCCAG GCAGCGGGCT ACAAGGCGAT GATCGACGAA CTGGAAAGCT GGCTGTGCGC GATCACCGGC TTCGATGCGA TCTGCATGCA GCCCAACTCC GGTGCTCAGG GTGAATACGC CGGCCTGATG GCCATTACCC GCTATCACTG CAGCCGCCAC CAGCCGATGC GCACGTTGTG CCTGATCCCG TCGTCGGCCC ACGGCACCAA CCCGGCGTCG GCACAGATGG CCGGCATGGA AGTGGTGATC GTCGATTGCG ACAACGATGG CAACGTCGAC CTGGCTGACC TCAAAGCCAA GGCGCATGCG GCCGGGGAGC GTCTGTCGTG CCTGATGATT ACCTACCCCT CGACCCACGG CGTGTACGAA GAGGGGATAC GCGAAATCTG CGATGTGGTG CACCAGTACG GCGGCCAGGT TTACATGGAC GGTGCCAACC TCAACGCCCA GGTGGGCCTG GCGCGCCCCG CAGACATTGG GGCCGACGTT TCACACATGA ACCTGCACAA GACGTTCTGC ATTCCCCACG GCGGCGGCGG CCCGGGTATG GGGCCGATCG GTATCCGCGC GCACCTCAAG CCGTTCGTCG CCAGCCATCC GGTGGTGCCG GTGCCTGGGT TGGACCCGAA CAACAGCGCG GTCAGCGCCG CGCCCTGGGG CAGCGCAAGC ATCTTGCCGA TCAGCTGGAT GTACATCGCC ATGATGGGCC CGCAGCTGGC CGACGCCAGC GAGGTGGCTA TCCTTTCGGC CAACTACCTG GCCAGCCAGT TGGGCGCGGC GTTCCCGGTG CTCTACCGCG GGCGCAACCA GCGCGTGGCG CATGAATGCA TCCTCGACCT GCGGCCGTTG AAAGCGCTGA CAGGCATCAG CGAAGAGGAC GTGGCCAAGC GCCTGATGGA CTATGGCTTC CACGCACCGA CCATGTCCTT CCCAGTGCCG GGCACGCTGA TGGTGGAGCC GACCGAGAGT GAATCGAAGG CTGAGCTGGA TCGGTTTGTC GAAGCGATGC TGGCGATTCG CGCGGAAATT GACGAAGTAC AGCAGGGCAA CTGGCCAGCG GAGAACAACC CGCTGAAACA TGCACCGCAT ACCTTGGCTG ATGTCTTGGG GGTATGGGAC AGACCGTATA GCCTGGAGCA GGCGGTGGCC CCCAGTGCTC ACGTGCGCCA GCACAAATAC TGGCCGGCGG TGAACCGGGT AGACAACGTG TATGGGGACA GGAACCTGTT CTGTGCGTGT GTGCCGGTAG AGGCTTATCG CTGA
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Protein sequence | MSQSPSLHQL QELNPFLRRH LGPDATEQQA MLNALGIASR NELIEQTVPP DIRLNRPLDL PAALDEQAAL AKLAGYAEQN QVWTSLIGMG YHGTITPTVI LRNVLENPGW YTAYTPYQPE IAQGRLEALL NFQQMVIDLT GLPLANASLL DEATAAAEAM ALAKRVARNK SNAFFADEHC HPQTLSVLKT RAEGFGFELI VDSVDNLAKH SVFGALLQYP DTHGEVRDLR PLIDQLHSQQ ALACVAADLL SLVVLAPPGE LGADVVLGST QRFGVPMGYG GPHAAYFACR DDYKRAMPGR IIGVSRDARG NTALRMALQT REQHIRREKA NSNICTAQVL LANIAGFYAV YHGPEGLQRI AQRVHRLTFI LAAGLEAKGI KRLNQHFFDT LTLNVGGAQA AIIESAEAAH INLRILGRGH LGVSLDETCT EQTVLRLLDI FLGVDHGLEI TALDQLALPE GIPASLVRRT PFLAHPVFNL HHSETEMLRY LKQLENKDLA LNQSMIPLGS CTMKLNATSE MIPITWPGFA QLHPFAPAAQ AAGYKAMIDE LESWLCAITG FDAICMQPNS GAQGEYAGLM AITRYHCSRH QPMRTLCLIP SSAHGTNPAS AQMAGMEVVI VDCDNDGNVD LADLKAKAHA AGERLSCLMI TYPSTHGVYE EGIREICDVV HQYGGQVYMD GANLNAQVGL ARPADIGADV SHMNLHKTFC IPHGGGGPGM GPIGIRAHLK PFVASHPVVP VPGLDPNNSA VSAAPWGSAS ILPISWMYIA MMGPQLADAS EVAILSANYL ASQLGAAFPV LYRGRNQRVA HECILDLRPL KALTGISEED VAKRLMDYGF HAPTMSFPVP GTLMVEPTES ESKAELDRFV EAMLAIRAEI DEVQQGNWPA ENNPLKHAPH TLADVLGVWD RPYSLEQAVA PSAHVRQHKY WPAVNRVDNV YGDRNLFCAC VPVEAYR
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