Gene PP_5192 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_5192 
SymbolgcvP-2 
ID1042488 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp5921548 
End bp5924421 
Gene Length2874 bp 
Protein Length957 aa 
Translation table11 
GC content64% 
IMG OID637148591 
Productglycine dehydrogenase 
Protein accessionNP_747293 
Protein GI26991868 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain 
TIGRFAM ID[TIGR00461] glycine dehydrogenase (decarboxylating) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCAGT CGCCATCCCT GCATCAACTG CAAGAGCTCA ACCCGTTTCT GCGTCGCCAC 
CTGGGCCCCG ATGCCACAGA GCAGCAGGCC ATGCTCAACG CGCTGGGTAT CGCCAGCCGC
AACGAGCTGA TCGAGCAGAC CGTTCCGCCA GACATCCGCC TCAATCGCCC CCTCGACCTC
CCAGCGGCAC TGGACGAGCA AGCCGCCCTG GCCAAGCTCG CCGGTTACGC CGAACAGAAC
CAGGTCTGGA CCAGCCTCAT CGGCATGGGC TACCACGGCA CCATCACCCC CACGGTCATC
CTGCGCAACG TGCTGGAAAA CCCTGGCTGG TACACCGCCT ACACGCCCTA CCAACCCGAA
ATTGCCCAAG GCCGGCTGGA GGCGCTGCTG AACTTCCAGC AAATGGTCAT CGACCTCACC
GGCCTGCCTC TGGCCAATGC CTCGCTGCTC GATGAAGCCA CCGCTGCCGC CGAAGCCATG
GCCCTGGCCA AGCGGGTGGC ACGCAACAAG AGCAACGCCT TCTTTGCCGA CGAGCACTGC
CATCCGCAGA CCCTATCGGT ACTCAAGACC CGCGCCGAAG GCTTCGGCTT TGAGCTGATC
GTCGATTCTG TGGATAACCT TGCCAAGCAC TCGGTGTTCG GCGCCTTGCT GCAGTACCCG
GACACCCACG GCGAAGTGCG CGATTTGCGC CCGCTGATCG ACCAGTTGCA CAGCCAGCAG
GCCCTGGCCT GCGTAGCCGC TGACCTGCTG AGCCTGGTGG TGCTGGCACC GCCCGGAGAG
CTCGGCGCCG ATGTGGTGCT GGGCTCGACC CAGCGCTTTG GTGTGCCGAT GGGCTACGGC
GGGCCTCACG CGGCCTATTT CGCCTGTCGC GACGACTACA AGCGAGCCAT GCCGGGGCGC
ATCATCGGCG TATCGCGCGA TGCCCGTGGC AACACCGCAT TACGGATGGC CCTGCAAACC
CGCGAGCAGC ATATTCGCCG CGAAAAGGCC AACTCCAACA TCTGCACGGC CCAGGTGCTG
TTGGCCAACA TTGCCGGCTT CTACGCGGTG TACCACGGCC CGGAAGGCCT GCAACGCATC
GCGCAGCGTG TGCACCGGTT GACCTTCATC CTGGCAGCCG GCCTTGAGGC CAAAGGCATC
AAACGCCTCA ATCAGCACTT CTTCGACACC CTTACCCTGA ATGTTGGCGG TGCCCAGGCG
GCCATCATTG AAAGCGCCGA GGCCGCGCAC ATCAATTTGC GCATTCTCGG TCGCGGGCAC
CTGGGGGTGA GCCTGGACGA AACCTGCACC GAACAGACGG TGCTGCGCCT GCTCGACATC
TTCCTGGGGG TGGATCATGG CCTGGAAATC ACCGCCCTCG ACCAGCTGGC CCTGCCTGAA
GGCATCCCCG CCAGCCTGGT GCGACGCACG CCATTCCTCG CCCATCCGGT GTTCAACCTG
CATCACAGCG AAACAGAGAT GCTGCGCTAC CTCAAGCAGC TAGAGAACAA GGACCTGGCG
CTGAACCAGT CGATGATACC GTTGGGCTCG TGCACCATGA AGCTCAACGC CACCAGTGAG
ATGATCCCCA TCACCTGGCC CGGTTTTGCC CAGCTGCACC CGTTCGCCCC GGCGGCCCAG
GCAGCGGGCT ACAAGGCGAT GATCGACGAA CTGGAAAGCT GGCTGTGCGC GATCACCGGC
TTCGATGCGA TCTGCATGCA GCCCAACTCC GGTGCTCAGG GTGAATACGC CGGCCTGATG
GCCATTACCC GCTATCACTG CAGCCGCCAC CAGCCGATGC GCACGTTGTG CCTGATCCCG
TCGTCGGCCC ACGGCACCAA CCCGGCGTCG GCACAGATGG CCGGCATGGA AGTGGTGATC
GTCGATTGCG ACAACGATGG CAACGTCGAC CTGGCTGACC TCAAAGCCAA GGCGCATGCG
GCCGGGGAGC GTCTGTCGTG CCTGATGATT ACCTACCCCT CGACCCACGG CGTGTACGAA
GAGGGGATAC GCGAAATCTG CGATGTGGTG CACCAGTACG GCGGCCAGGT TTACATGGAC
GGTGCCAACC TCAACGCCCA GGTGGGCCTG GCGCGCCCCG CAGACATTGG GGCCGACGTT
TCACACATGA ACCTGCACAA GACGTTCTGC ATTCCCCACG GCGGCGGCGG CCCGGGTATG
GGGCCGATCG GTATCCGCGC GCACCTCAAG CCGTTCGTCG CCAGCCATCC GGTGGTGCCG
GTGCCTGGGT TGGACCCGAA CAACAGCGCG GTCAGCGCCG CGCCCTGGGG CAGCGCAAGC
ATCTTGCCGA TCAGCTGGAT GTACATCGCC ATGATGGGCC CGCAGCTGGC CGACGCCAGC
GAGGTGGCTA TCCTTTCGGC CAACTACCTG GCCAGCCAGT TGGGCGCGGC GTTCCCGGTG
CTCTACCGCG GGCGCAACCA GCGCGTGGCG CATGAATGCA TCCTCGACCT GCGGCCGTTG
AAAGCGCTGA CAGGCATCAG CGAAGAGGAC GTGGCCAAGC GCCTGATGGA CTATGGCTTC
CACGCACCGA CCATGTCCTT CCCAGTGCCG GGCACGCTGA TGGTGGAGCC GACCGAGAGT
GAATCGAAGG CTGAGCTGGA TCGGTTTGTC GAAGCGATGC TGGCGATTCG CGCGGAAATT
GACGAAGTAC AGCAGGGCAA CTGGCCAGCG GAGAACAACC CGCTGAAACA TGCACCGCAT
ACCTTGGCTG ATGTCTTGGG GGTATGGGAC AGACCGTATA GCCTGGAGCA GGCGGTGGCC
CCCAGTGCTC ACGTGCGCCA GCACAAATAC TGGCCGGCGG TGAACCGGGT AGACAACGTG
TATGGGGACA GGAACCTGTT CTGTGCGTGT GTGCCGGTAG AGGCTTATCG CTGA
 
Protein sequence
MSQSPSLHQL QELNPFLRRH LGPDATEQQA MLNALGIASR NELIEQTVPP DIRLNRPLDL 
PAALDEQAAL AKLAGYAEQN QVWTSLIGMG YHGTITPTVI LRNVLENPGW YTAYTPYQPE
IAQGRLEALL NFQQMVIDLT GLPLANASLL DEATAAAEAM ALAKRVARNK SNAFFADEHC
HPQTLSVLKT RAEGFGFELI VDSVDNLAKH SVFGALLQYP DTHGEVRDLR PLIDQLHSQQ
ALACVAADLL SLVVLAPPGE LGADVVLGST QRFGVPMGYG GPHAAYFACR DDYKRAMPGR
IIGVSRDARG NTALRMALQT REQHIRREKA NSNICTAQVL LANIAGFYAV YHGPEGLQRI
AQRVHRLTFI LAAGLEAKGI KRLNQHFFDT LTLNVGGAQA AIIESAEAAH INLRILGRGH
LGVSLDETCT EQTVLRLLDI FLGVDHGLEI TALDQLALPE GIPASLVRRT PFLAHPVFNL
HHSETEMLRY LKQLENKDLA LNQSMIPLGS CTMKLNATSE MIPITWPGFA QLHPFAPAAQ
AAGYKAMIDE LESWLCAITG FDAICMQPNS GAQGEYAGLM AITRYHCSRH QPMRTLCLIP
SSAHGTNPAS AQMAGMEVVI VDCDNDGNVD LADLKAKAHA AGERLSCLMI TYPSTHGVYE
EGIREICDVV HQYGGQVYMD GANLNAQVGL ARPADIGADV SHMNLHKTFC IPHGGGGPGM
GPIGIRAHLK PFVASHPVVP VPGLDPNNSA VSAAPWGSAS ILPISWMYIA MMGPQLADAS
EVAILSANYL ASQLGAAFPV LYRGRNQRVA HECILDLRPL KALTGISEED VAKRLMDYGF
HAPTMSFPVP GTLMVEPTES ESKAELDRFV EAMLAIRAEI DEVQQGNWPA ENNPLKHAPH
TLADVLGVWD RPYSLEQAVA PSAHVRQHKY WPAVNRVDNV YGDRNLFCAC VPVEAYR