| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5190 |
|---|
| Symbol | |
|---|
| ID | 1042440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 5919406 |
|---|
| End bp | 5921079 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637148589 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | NP_747291 |
|---|
| Protein GI | 26991866 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACACCC CCGACAACCC CGCACTCGAC CTCAAGCGCG TGCTCCAGGC CCTGCTCGCT
GACCAGCACC TGCACGCCAG CGATACCCTG CAAGTACTCG AACACGCCGC TGCCCACCCC
GCTAGCCACC CGCTGGAGCA CATCGCCGCC TGCAGCCTGG AAAGCCGCCA GCACCCCGGC
CAGCCCCTGG ACTTGGAGCA CCTTTGCCAG TGGCTGGCCG ACAAGGTCGG CCAACCCTAC
CTGCGCATCG ACCCCATGCA ACTCGACCTG CCCCAGGTCA CCAGCCTGAT CTCCCCAGCC
TTCGCCCAGC GCCACGGCAT CCTCATCGTC GCGGCCGATG CCTCCAGCGT CACCGTCGCC
AGCGCCCAGC CTTTCCAGGA TGACTGGCAG GCCGACCTGG CCCGCAGCCT CGGCCGGTCG
ATCCGTCGCG TACTGGCCAG CCCGCAGCAG ATCCGTCAGT CAGCGCAGTC GTTCCACCGC
CTGGCCCAGT CGGTAAAAGG CGCGCAATAC CAGCAGTCGG CGAGCCTGGG GGAACTTGAG
CAATTGCTTG AGCTGGGCAA ACGCCAGGCC GAGGCCAGCG CAGACGACGC GCATATCGTG
CATATCGTCG ACTGGCTGTT GCAGTACGCC ATCGAGCAAC GCGCCAGCGA TATCCACCTG
GAACCACGCC GCGAACAGGG CCAGCTGCGC TACCGTATCG ATGGCCTGCT GCACACCGTC
TACGCCTTCC CCGCCGGGGT CACCCTGGCC CTCGTCAGCC GCCTGAAACA CCTGGGCCGC
ATGGACGTTG CAGAGAAGCG CCGGCCGCAG GACGGCCGGC TGCAAAGCCG CCTACCCGGT
GGTGGCGAAG TGGAGCTGCG GCTTTCGACC CTGCCCACCC CATTTGGCGA GAAACTGGTG
TTGCGCCTGT TCGACCCGCA CCAGTTGCAA GAGGGCTTCG ACCGCCTTGG CCTGCACGGC
CAGCAACTGG CCCAATGGCA GCGCCTGCTT CGTCAGCGCC AAGGCATCAT CCTGGTCACC
GGCCCCACCG GCTCCGGCAA GACCAGCACG CTGTACACCA GCCTCAAACT GCTGGCCACA
CCACAGGTCA ACCTGTGCAC CATCGAAGAC CCGATCGAGC GCCTGGAGCC AGCCTTCAAC
CAGTTGCAGG TGCAGCCCGC GCTGGACCTG GGGTTTGCCA ACGCGGTCAG GGCCATGCTG
CGCCAAGACC CCGACATCAT CATGATCGGC GAAATCCGCG ACCGCGAAAC CGCTCTGGTG
GCGGTGCAGG CAGCGCTGAC CGGGCACCTG GTGCTATCGA CCCTGCATAC CAACGACGCC
TGCGCAGCAA TCACCCGTTT GCAAGAGCTG GGTGTGGCCG ACTACCTGAT CAAGGCGACG
CTTATCGGGG TGATGGCCCA GCGCCTGGTG CGAACCGTCT GCACCGACTG CCAGACAGGT
TCATCAGCCA CCTGCCGAGC CTGCCGCGGC ACCGGTTTTC AGGGGCGCAC GGGATTATTC
GAACTGCTCG AGCCCAGCGA CACCTTGCGC GCATTGATCG GCCCTGATGC CGACCTGACC
TGTTTGCGGC GCCAGGCGCT GGCCGATGGC CTGGTTGACC TGCGCCGTTG CGGCGAGGCC
AAGGTGGCCG CTGGGCAGAC CCGTGCCGAG GAAGTGCTGC GCGTCTGCAA CTGA
|
|---|
| Protein sequence | MHTPDNPALD LKRVLQALLA DQHLHASDTL QVLEHAAAHP ASHPLEHIAA CSLESRQHPG
QPLDLEHLCQ WLADKVGQPY LRIDPMQLDL PQVTSLISPA FAQRHGILIV AADASSVTVA
SAQPFQDDWQ ADLARSLGRS IRRVLASPQQ IRQSAQSFHR LAQSVKGAQY QQSASLGELE
QLLELGKRQA EASADDAHIV HIVDWLLQYA IEQRASDIHL EPRREQGQLR YRIDGLLHTV
YAFPAGVTLA LVSRLKHLGR MDVAEKRRPQ DGRLQSRLPG GGEVELRLST LPTPFGEKLV
LRLFDPHQLQ EGFDRLGLHG QQLAQWQRLL RQRQGIILVT GPTGSGKTST LYTSLKLLAT
PQVNLCTIED PIERLEPAFN QLQVQPALDL GFANAVRAML RQDPDIIMIG EIRDRETALV
AVQAALTGHL VLSTLHTNDA CAAITRLQEL GVADYLIKAT LIGVMAQRLV RTVCTDCQTG
SSATCRACRG TGFQGRTGLF ELLEPSDTLR ALIGPDADLT CLRRQALADG LVDLRRCGEA
KVAAGQTRAE EVLRVCN
|
|---|
| |