| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5108 |
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| Symbol | rpoH |
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| ID | 1042633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5827988 |
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| End bp | 5828842 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637148507 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | NP_747209 |
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| Protein GI | 26991784 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.149866 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACAT CGTTGCAACC TGCCTATGCC CTGGTACCCG GTGCAAACCT GGAAGCCTAT
GTGCACACGG TCAACAGCAT CCCGCTGCTG ACGGTCGAGC AGGAGCGTGA TCTGGGCGAG
CGTCTCTATT ATGAGCAGGA TGTCGAGGCC GCTCGTCAGA TGGTGATGGC CCACCTGCGT
TTCGTCGTAC ATATCGCCCG TAGTTATGCC GGCTACGGGT TGGCCCAGGC TGACCTGATC
CAGGAAGGCA ACGTCGGCCT GATGAAAGCC GTCAAGCGCT TCAACCCGGA AATGGGCGTG
CGCCTGGTGT CGTTCGCCGT GCACTGGATC AAGGCAGAGA TCCACGAGTT CATTCTGCGC
AACTGGCGCA TCGTCAAGGT GGCTACCACC AAGGCTCAGC GCAAGCTGTT CTTCAACCTG
CGTAGCCAGA AGAAGCGCCT GGCGTGGCTG AACAACGACG AAGTGCATCG CGTGGCGGAA
AGCCTTGGCG TCGAGCCGCG CGAAGTGCGC GAGATGGAAA GCCGCCTCAG CGGCCAGGAC
ATGGCCTTTG ACCCGGCAGC GGAAGCTGAC GACGACAGCG CCTTCCAGTC GCCTGCGCAT
TACCTGGAAG ACCACCGTTA CGATCCGGCG GTGCAGCTTG AGGATGCCGA CTGGAGTGAC
AACTCCACCA GCAACCTGCA CGAAGCGCTG CAGGGCCTGG ACGAGCGTAG CCGCGACATT
CTCTACCAGC GTTGGCTGGC GGAAGAGAAG GCCACGCTGC ATGAACTGGC AGACAAGTAC
AGCGTATCGG CTGAGCGTAT TCGCCAGTTG GAGAAGAATG CGATGAACAA GGTCAAGGCA
CTGATCGCTG CCTGA
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| Protein sequence | MTTSLQPAYA LVPGANLEAY VHTVNSIPLL TVEQERDLGE RLYYEQDVEA ARQMVMAHLR
FVVHIARSYA GYGLAQADLI QEGNVGLMKA VKRFNPEMGV RLVSFAVHWI KAEIHEFILR
NWRIVKVATT KAQRKLFFNL RSQKKRLAWL NNDEVHRVAE SLGVEPREVR EMESRLSGQD
MAFDPAAEAD DDSAFQSPAH YLEDHRYDPA VQLEDADWSD NSTSNLHEAL QGLDERSRDI
LYQRWLAEEK ATLHELADKY SVSAERIRQL EKNAMNKVKA LIAA
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