Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_5088 |
Symbol | priA |
ID | 1043212 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 5810664 |
End bp | 5812883 |
Gene Length | 2220 bp |
Protein Length | 739 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637148487 |
Product | primosome assembly protein PriA |
Protein accession | NP_747189 |
Protein GI | 26991764 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
TIGRFAM ID | [TIGR00595] primosomal protein N' |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.420968 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCGACG TCATCCTGCG CCTTGCCCTG CCCTCCCCGC TGCGGCGCCT GTTCGACTAC AAGGCGCCGG CGAGCATGGC GCGCCTGACC TTGACCCCAG GCATGCGCAT CCGCGTGCCC TTTGGCCGCC GCGAAATGAT CGGCGTGCTG ATAGAGGTGT GCACGCAGAG CGAAGTGCCC GCCGACAAAC TGAAGCCTGC CAGCGCCCTG CTCGACCCGG TGTCCCCCAT CCCCGCGTCG CTGTTCAAGT TGTGCCTGTG GACCGCCCAG TACTACCAGC ACAGCCTGGG CGATACCCTG AGCTGGGCGC TGCCCACGCT ACTGCGCCAG GGCGAAGCCG CCGAAATGCG CCAGGAACGC TTCTGGCACA TAGCCCCGGG CGCCCGCCTG GAAGACCCGC GCATCGCCCG CGCGCCGCGC CAGCGCGACG CCCTCAAGAC CCTGGCCCAG CACCCGCACG GCGTGGCCCA CAGCCTGCTG GCCAAACTCA ACCTGAACAA GGACAGCCTC GACCTGCTGC TGGCCAAGGA CCTGGTACAG ATCGAGACGC GCCGCCACTT GCCGGCACTA CGTCATGAGC ACTGGCTGGC ACAGCCGGAA CTGCCGCTCA ACGAAGAGCA ACGCGAAGCC TTCGACGCCG TGTGCGAGGG TTTTGGCGGT TTCGGCGCGT TCTTGCTGGC CGGCGTCACC GGCAGTGGCA AGACCGAGGT CTACCTGCAA CTGATCCGTG AAACCCTGGA AGCCGGCAAG CAGGCGCTGG TGCTGATCCC GGAGATCAAC CTCGGCCCGC AAACCCTGGC CCGCTTCGAG CAACGCTTCA ACGCGCGCAT TGCCCTGCTG CACTCTGCGG TAAACGACCG CGAACGCCTG GATGCCTGGC TGGCGGCACG GGACGGCGAG GCCGATATCA TCATCGGCAC CCGCTCGGCA TTGTTCACGC CGATGAAAAA CCCCGGCCTG ATCATCATCG ACGAAGAGCA CGACGGCTCC TATAAACAGC AGGAAGGCCT GCGGTACCAC GCCCGCGACC TGGCGCTGGT ACGCGCTCAC CAGGAGAACA TCCCGATCCT GCTCGGTTCC GCCACACCGT CGCTGGAAAC CCTGCATAAC GCCCTGACCG GCCGCTACCG CCTGCTGCGT ATGAACCAAC GCGCCGGAGG GGCACGCCCG CCGCGCATGC TGCGCCTTGA TGTGAAGAGC CTGCCACTGG ACAGCGGCAT CAGTGGCCCG CTGCAGCAGG CTATCCGACA GACCCTGGAG GCTGGCCAAC AAGTGCTGGT GTTCCTCAAC CGCCGCGGCT TTGCCCCAAC CTTGCTGTGC CACGATTGCG GCTGGCTGTC CGAATGCCCA CGCTGCGATG CGCGCATGAC CGTGCACCAG CGCTCCGGCG TGCTGCGCTG CCACCACTGT GGCTATGACG AACGCCTGCC GCACCAGTGC CCGCAATGCA ACCACGTCGA TCTGCGCCCG GTCGGTGCCG GTACCGAACG CGCCGAAGAG CGCCTGAAGG TGCTGTTCCC GGATTACCCG ATCCTGCGCG TGGACCGCGA CAGCACGGCG CGCAAGGACG CCATGCACAA CCTGTTCAGC ACCATCCAGC GCGGCCAGCC GAGCATCCTC GTCGGCACCC AGATGCTCGC CAAGGGCCAC CACTTCCCGC GGGTGACCCT GGTGGCCATC CTTGATGCCG ATGGCGGGCT GTTTTCCGGT GACTTCCGCG CCAGCGAGCG CATGGCACAA CTTATCGTAC AGGTGGCCGG GCGGGCCGGG CGGGCCGAAG AGCCCGGCAA GGTCATCATC CAGACCCACC TGGCCGACCA CCCACTGTTG GTCCAGCTAA CCGAGCAAGG CTACTTCGCC TTCGCCGAAC AGGCCCTGGA CGAACGCCGA GCCGCCGGGC TGCCGCCCTA CTCGCATCTG GCCTTGCTGC GTGCCGAAGC ACACAAGCCG GGGCAGGCCG AAGGTTTCCT CGACGAAGCC TGTGCCGCCG CCGAGCGCCT GGTGGCCGAA CAGCGCCTGC CGGGTATCGA ACTGCTGGGC CCGGTACCGG CGCCCATGGA GCGCCGCGCC GGACGATTCC GCGCACAATT GTTGATACAG GCCAACACCC GGGCGCCGTT GCATCGACTG ATCAGCGCCT GGTTGCTAGT GTTGGAACAG TTGCCGAGCG GGCGCCAGGT GCGCTGGTCG CTGGATGTCG ACCCGGTAGA CCTGTATTGA
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Protein sequence | MSDVILRLAL PSPLRRLFDY KAPASMARLT LTPGMRIRVP FGRREMIGVL IEVCTQSEVP ADKLKPASAL LDPVSPIPAS LFKLCLWTAQ YYQHSLGDTL SWALPTLLRQ GEAAEMRQER FWHIAPGARL EDPRIARAPR QRDALKTLAQ HPHGVAHSLL AKLNLNKDSL DLLLAKDLVQ IETRRHLPAL RHEHWLAQPE LPLNEEQREA FDAVCEGFGG FGAFLLAGVT GSGKTEVYLQ LIRETLEAGK QALVLIPEIN LGPQTLARFE QRFNARIALL HSAVNDRERL DAWLAARDGE ADIIIGTRSA LFTPMKNPGL IIIDEEHDGS YKQQEGLRYH ARDLALVRAH QENIPILLGS ATPSLETLHN ALTGRYRLLR MNQRAGGARP PRMLRLDVKS LPLDSGISGP LQQAIRQTLE AGQQVLVFLN RRGFAPTLLC HDCGWLSECP RCDARMTVHQ RSGVLRCHHC GYDERLPHQC PQCNHVDLRP VGAGTERAEE RLKVLFPDYP ILRVDRDSTA RKDAMHNLFS TIQRGQPSIL VGTQMLAKGH HFPRVTLVAI LDADGGLFSG DFRASERMAQ LIVQVAGRAG RAEEPGKVII QTHLADHPLL VQLTEQGYFA FAEQALDERR AAGLPPYSHL ALLRAEAHKP GQAEGFLDEA CAAAERLVAE QRLPGIELLG PVPAPMERRA GRFRAQLLIQ ANTRAPLHRL ISAWLLVLEQ LPSGRQVRWS LDVDPVDLY
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