| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5061 |
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| Symbol | |
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| ID | 1044579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5770950 |
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| End bp | 5772953 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637148460 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | NP_747162 |
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| Protein GI | 26991737 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.536897 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCTG CCTCACTTAC CAAGCCCCCC GCCGAGAGGG TACGGGTCAA CCGCGTGGTG
TTTTTCACCT CCGCGCTGAT GATCCTTGTT CTGACTGCCT TGCTGATCGC TGTACCCGAA
ACCGCCGGCC AGGTGCTGGG CGTGGCCCAG AAGTGGCTGA CGCGCACCTT TGGCTGGTAC
TACATGCTGG TCATCTGCGG ATACCTGCTG TTCGTCGTCT ACCTGGCTTT CTCCGACTAC
GGCAGCCTCA AGCTGGGTGG CAAGGACGAC CAGCCTGACT TCAGCTACGG CGCCTGGGCC
GGCATGCTGT TCTCGTCCGG TATCGGTATT TCGCTGCTGT ACTTCGGCGC CTCCGAGCCC
CTGGACCACT ACTTCAACCC ACCGGAAGGC ACTCCTGCCA GCCTCGAGGC CGCGCGCCAG
GGCCTGCAGC TGACCTTCCT GCACTGGGGC CTGCACGGCT GGGCGATCTA TGCCCTGGTC
GGCCTGGCCG TGGGTTACTT TGCCTACCGC CACAACCAGC CGCTGGCACT GCGCTCGGCG
CTGTACCCGC TGGTGGGCGA GCGTTGGGTC AAGGGCGCTG CCGGCAACGC CGTCGATATC
TTCGGCATGT TCGTCACCCT GCTGGGCCTG GTGACCAACC TGGGCATCGG CGCGATGCAA
GTATCGTCCG GCCTGGAATA CCTGTTCGGC ATGGACCACA GCAAGACCAA CCTGCTGGTG
GTGATCCTGG TCATGGCCGG CGTGGCTACC GTGGCAGCGG TATCGGGCGT GGAGAACGGC
ATCCGCCGCC TGTCCAACCT GAACATCATG CTGTTCAGTG GCCTGTTGAT CTTCGTGCTG
CTGGGCGGCG AAACCCTGCA CCTGCTCAAC GGCTTCGTGC AGAACGTTGG CGACTACCTG
AACGGCATCG TGCTGAAAAC CTTCGACCTC TATGTGTATG AAGGCGAAGC CGGCAAGTCG
GAGCGCTGGC TGGGCCTGTG GACCGTGTTC TACTGGGCCT GGTGGATCTC CTGGGGCCCG
TTCGTCGGCA TGTTCATTGC CCGTATTTCC AAGGGCCGCA CCGTGCGCCA ACTGGTGATG
GGTGTGCTGC TGATCCCGCT GGGCTTCACC CTGGCCTGGC TGTCGATCTT CGGCAACACC
GCACTGGACC TGGTGATCAA CCAGGGCGCC GTGGAGCTGG GCAAGACTGC GCTGGAACAG
CCATCGATGT CGATCTACCA GCTGCTGGAA CACTTCCCGG CAGCCAAGAT CGTCATTGGT
GTGGCAGTGT TCGTCGGGTT CGTGCTGTTC CTCACGCCGG CCGACTCCGG CGCGGTGATG
ATGGCCAACC TGTCGTGCAC AGGCGGCAAG GTCGACGAAG ATGCCCCGCA CTGGATGGTG
GTGTTCTGGT CCGTGGTGAT CACCCTGGTG ACCATCGGCC TGCTGTTTGC CGGTAACTTC
GAAGCCATGC AGACCATGGT CGTGCTGGCG GGCCTGCCGT TCTCGGTGGT GCTGGTGCTG
TTCATGTTCG GCCTGTACAA GGCCATGAAG CAGGACGTGG TGATCGAGCA GGAGCGCGCC
GAACTGGCCG CCCGTGGCCG TCGCGGCTTT AGCGAGCGCC TGACCCAGCT GGAACTGCAG
CCGACCCAGG CCGTGGTGCA GCGCTTCATG GACAAGCAGG TCAGCCCGGC GTTGAAAGAA
GCCGCTGCAC AGCTGCAGAC GCAGGGCTTC GAGGTGGAAA CCCGCGTTGG CCAGTCGCGC
AACCTGATGG GCTTGCGGGT GATGATGGAA GAGGGCAACC CGTTCGTCTA CGAAGTGAGC
CTTGACGGCT ATATGGCCGC GCCGAGCGAG GCGCCGGTCG AGGGTGAGCC TGAACTGCGC
CAGCGCTTCT ACCGCGCCGA GGTCTACCTG CATGACGGCA GTCAGGAGTA CGACCTGATG
GGCTTTGCCC CAGACCAGAT CGTGCGTGAT GTGCTCGATC AGTTCGAGAG CCATCGCCAG
GTGCTTGGCC GCGTCTATAG CTGA
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| Protein sequence | MSSASLTKPP AERVRVNRVV FFTSALMILV LTALLIAVPE TAGQVLGVAQ KWLTRTFGWY
YMLVICGYLL FVVYLAFSDY GSLKLGGKDD QPDFSYGAWA GMLFSSGIGI SLLYFGASEP
LDHYFNPPEG TPASLEAARQ GLQLTFLHWG LHGWAIYALV GLAVGYFAYR HNQPLALRSA
LYPLVGERWV KGAAGNAVDI FGMFVTLLGL VTNLGIGAMQ VSSGLEYLFG MDHSKTNLLV
VILVMAGVAT VAAVSGVENG IRRLSNLNIM LFSGLLIFVL LGGETLHLLN GFVQNVGDYL
NGIVLKTFDL YVYEGEAGKS ERWLGLWTVF YWAWWISWGP FVGMFIARIS KGRTVRQLVM
GVLLIPLGFT LAWLSIFGNT ALDLVINQGA VELGKTALEQ PSMSIYQLLE HFPAAKIVIG
VAVFVGFVLF LTPADSGAVM MANLSCTGGK VDEDAPHWMV VFWSVVITLV TIGLLFAGNF
EAMQTMVVLA GLPFSVVLVL FMFGLYKAMK QDVVIEQERA ELAARGRRGF SERLTQLELQ
PTQAVVQRFM DKQVSPALKE AAAQLQTQGF EVETRVGQSR NLMGLRVMME EGNPFVYEVS
LDGYMAAPSE APVEGEPELR QRFYRAEVYL HDGSQEYDLM GFAPDQIVRD VLDQFESHRQ
VLGRVYS
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