| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5024 |
|---|
| Symbol | |
|---|
| ID | 1043376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 5723289 |
|---|
| End bp | 5724089 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637148423 |
|---|
| Product | amino acid ABC transporter, periplasmic amino acid-binding protein |
|---|
| Protein accession | NP_747125 |
|---|
| Protein GI | 26991700 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.258075 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGA AATACCTTTC GCGACTGCTG GTCGGTGTGA CCGCCCTGGT CGCCGTGACC
GCGGCCCAGG CGGGCGCCAT CGACGACGCG GTCAAGCGTG GCACCCTGCG GGTGGGCATG
GACCCGACTT ACATGCCGTT CCAGATGACC AACAAACGTG GCGAGATCAT CGGCTTCGAA
GTCGATATCC TCAAAGCCAT GGCCAAGTCC ATGGGCGTGA AGTTCGAGGC AGTGTCCACC
GCCTATGACG GCATCATCCC GGCCCTGCTG ACCGACAAGT TCGACATGAT CGGCAGCGGC
ATGACCCTGA CCCAGGAGCG CAACCTGCGC CTGAACTTCA GCGAACCCTT CATCGTGGTT
GGCCAGACCC TGCTGATCCG CAAGGAGCTG GCTGGCGAGA TCAAGTCGTA CAAGGACCTG
AACAACGAGA AGTACCGCCT GACCTCCAAG CTTGGCACCA CCGGCGAAAT GGTCTCCAAG
AAGCTGATCA GCAAAGCCAA GTACCACGGC TACGACAACG AACAGGAAGC CGTCATGGAC
GTGGTCAACG GCAAGGCCGA CGCCTTTGTC TATGACGCGC CGTACAACGT GGTGGCGGTG
GATAAAGCCG GTGCAGGCAA GCTGCTGTTC CTCGACGAGC CCTTCACCTA CGAGCCGCTG
GCCTTCGGCC TGAAGAAAGG CGACTACGAC AGCATCAACT TCATCAACAA CTTCCTGCAC
CAGATCAAGC ACGACGGGAC CTACGATCGT ATTCACGACA AGTGGTTCAA GAACAAGGAC
TGGCTGAAGG AAATGGAATA A
|
|---|
| Protein sequence | MIKKYLSRLL VGVTALVAVT AAQAGAIDDA VKRGTLRVGM DPTYMPFQMT NKRGEIIGFE
VDILKAMAKS MGVKFEAVST AYDGIIPALL TDKFDMIGSG MTLTQERNLR LNFSEPFIVV
GQTLLIRKEL AGEIKSYKDL NNEKYRLTSK LGTTGEMVSK KLISKAKYHG YDNEQEAVMD
VVNGKADAFV YDAPYNVVAV DKAGAGKLLF LDEPFTYEPL AFGLKKGDYD SINFINNFLH
QIKHDGTYDR IHDKWFKNKD WLKEME
|
|---|
| |