| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4994 |
|---|
| Symbol | |
|---|
| ID | 1042505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 5691617 |
|---|
| End bp | 5692522 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637148394 |
|---|
| Product | TonB family protein |
|---|
| Protein accession | NP_747096 |
|---|
| Protein GI | 26991671 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.416898 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCACC CCGCTGACGT CCCTGCCGAC CTGCTGCCTC CCCGTGTTCG CCCTGCGGAC
CGGCTTGGCT TCACCCTGTT CCTGGCTGCG CTGGTGCACC TGGCGCTGAT CCTTGGCGTC
GGCTTCACCG TGGTCAAGCC TGCCGAAATC CGCCACACCA TGGACATCAC CCTGGCCACC
TTCAAGAGCG AGAAACCGCC CGAGAAGGCT GACTTCCAGG CCCAGGACAA CCAGCAAGGC
AGCGGCACCC TGGACAAGAA AGCGGTGCCC AAGACCACTG AGCTGGCGCC GTTCCAGGAC
AGCAAGATCA ACAAGATCAC CCCACCGCCT GCGGCCAGGC CCGAGGTGGT CCCACCCCCT
CCCCCGAAAA AGTCGGCAGT GGTGACGACG GCGCCCAAGC CGCACAAGGT CGAGCCCAAA
CCCAAGGAAA GCAAGGCGCA GCCCAAGCCA GCCGCGCCGA CGCCGGACTT CGACAGCTCG
CAGCTGTCCA GCCAGATCGC CAGCCTGGAG GCGGAGCTGT CCAACGAGCA GCAGATGTAC
GCCAAGCGCC CGCGCATCCA TCGCCTGAAC GCCGCATCGA CCATGCGCGA CAAGGGCGCC
TGGTACAAGG AAGAGTGGCG CAAGAAGGTC GAGCGCGTGG GTAACCTCAA CTACCCCGAC
GAAGCACGCC GACAGCAGAT CTACGGCAAC TTGCGCATGA TGGTGTCGAT CAACCGCGAT
GGCTCGCTGT ACGAGGTGCT GGTACTGGAA TCATCCGGGC AGCCCGTGCT GGACCAGGCG
GCGCAACGCA TCGTGCGGCT GGCCGCGCCG TTTGCACCGT TTACCGGGGA TCTAGCCGAG
TTCGACCGGC TGGAGATCAT CCGCACCTGG CGCTTTGCCC GTGGGGACCG TTTGTCCAGT
AACTGA
|
|---|
| Protein sequence | MTHPADVPAD LLPPRVRPAD RLGFTLFLAA LVHLALILGV GFTVVKPAEI RHTMDITLAT
FKSEKPPEKA DFQAQDNQQG SGTLDKKAVP KTTELAPFQD SKINKITPPP AARPEVVPPP
PPKKSAVVTT APKPHKVEPK PKESKAQPKP AAPTPDFDSS QLSSQIASLE AELSNEQQMY
AKRPRIHRLN AASTMRDKGA WYKEEWRKKV ERVGNLNYPD EARRQQIYGN LRMMVSINRD
GSLYEVLVLE SSGQPVLDQA AQRIVRLAAP FAPFTGDLAE FDRLEIIRTW RFARGDRLSS
N
|
|---|
| |