Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_4986 |
Symbol | |
ID | 1041617 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 5680657 |
End bp | 5681274 |
Gene Length | 618 bp |
Protein Length | 205 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637148386 |
Product | hemolysin III family channel protein |
Protein accession | NP_747088 |
Protein GI | 26991663 |
COG category | [R] General function prediction only |
COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0394739 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTATTACG GTGAACGCTT CAACGCCTGG ACCCACCTGG TCGGTGCCGT CCTCGCTGCT ATTGGTGCCA TCTGGCTGAT CGTGGCCGCG GGCCTGCAAG GCGACCCGTG GAAGATCGTC AGCTTCTCCA TCTACGGCGG CACGCTGCTG TTGCTGTACA GCATTTCCAC CCTGTACCAC AGCACCCGTG GGCGGGCGAA AGTGATCATG CGCAAGCTCG ACCACCTGTC GATCTATCTG CTGATTGCCG GCAGCTACAC GCCGTTTTGC CTGGTCAGCC TGCGCGGCCC TTGGGGATGG AGCCTGTTCG GCGTGGTCTG GGGGCTGGCG ATCATCGGCA TGTTGCAAGA GATCAAGCCG CGCTCCGAGG CGCGGATCCT GTCGATCATC ATCTATGCGG TAATGGGCTG GATCGTGCTG GTGGCAGTCA AGCCGCTGCT GAACTCGCTG GGCACGGCCG GCTTCGCCTG GCTGGCTGCC GGCGGCGTGT TCTACACCGT CGGCATCATT TTCTTCGCCT TCGACAGCCG TTTCCGCCAC TGGCATGGCA TCTGGCACCT GTTCGTCATC GCTGGCAGCC TGATGCACTT CGTGGCGGTG TCGCTCTACG TGCGCTAG
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Protein sequence | MYYGERFNAW THLVGAVLAA IGAIWLIVAA GLQGDPWKIV SFSIYGGTLL LLYSISTLYH STRGRAKVIM RKLDHLSIYL LIAGSYTPFC LVSLRGPWGW SLFGVVWGLA IIGMLQEIKP RSEARILSII IYAVMGWIVL VAVKPLLNSL GTAGFAWLAA GGVFYTVGII FFAFDSRFRH WHGIWHLFVI AGSLMHFVAV SLYVR
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