Gene PP_4985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_4985 
Symbol 
ID1043372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp5679937 
End bp5680656 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content66% 
IMG OID637148385 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionNP_747087 
Protein GI26991662 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0506786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACTGT CCCGCTTCTT CATCGACGCC CCCCTGAGCC TTGGCGAGCA CGACCTGCCC 
GAGGCCCAGG CCCATTACAT TGGCCGCGTG CTGCGCATGG CACCCGGCGA CGCCGTGCAG
CTGTTCGATG GCAGCGGCCA GGAATACCGT GGTCAGTTGC TCGAGGTGGG CAAGAAAACT
GTCCGCGTCA GCCTTGACCA GGCCTTTGCC GGCCAGGCCG ATTCACCGCT GCATGTGCAC
CTGGGCCAGG GCCTTTCCCG TGGCGAGCGC ATGGACTGGG CGATCCAGAA GGCCACCGAG
CTTGGTGCCA ACGAAATCAC CCCGATCGTC AGCGAGCGCT GCGAAGTGCG CCTGAAAGAC
GAACGCGCCG ACAAGCGCCT GGCCCACTGG CGCCAAGTGG CGATCAGCGC CTGTGAACAA
TGCGGGCGTT CTACCTTGCC CGTCATCCAC CCACCCGTGA CCCTGGCCGA ATGGTTGAGC
AGCACCAAGG CTGACCTGAA GCTGGTCCTG CACCCGGTGG CTGAGCCGCT TATCAGCCAT
GAAAAGCCCG CCACCCTGGC CTTCGTGATC GGCCCCGAAG GCGGCCTTAG CGAAGCCGAG
GTCGAGCAGG CCAAAGCCGC CGGCTTCCAC GCAGCACGCC TTGGCCCGCG CGTGCTGCGC
ACCGAGACCG CGCCGGTGGT GGCGCTGTCG GTGGCACAGC AGTTGTGGGG CGACTTTTAA
 
Protein sequence
MRLSRFFIDA PLSLGEHDLP EAQAHYIGRV LRMAPGDAVQ LFDGSGQEYR GQLLEVGKKT 
VRVSLDQAFA GQADSPLHVH LGQGLSRGER MDWAIQKATE LGANEITPIV SERCEVRLKD
ERADKRLAHW RQVAISACEQ CGRSTLPVIH PPVTLAEWLS STKADLKLVL HPVAEPLISH
EKPATLAFVI GPEGGLSEAE VEQAKAAGFH AARLGPRVLR TETAPVVALS VAQQLWGDF