| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4952 |
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| Symbol | dbpA |
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| ID | 1043931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 5641825 |
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| End bp | 5643210 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637148353 |
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| Product | ATP-dependent RNA helicase DbpA |
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| Protein accession | NP_747055 |
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| Protein GI | 26991630 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.428852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCACCG AATCCACCGC CTTTGCCACC TTGCCGCTGT CCACTGCCAT GCTGGCCAAC
CTGGAGGCCC TTGGCTATGC CTCGATGACG CCGATCCAGG CCCAGAGCCT GCCTGTCATC
CTCAAAGGCC AGGACCTGAT CGCCCAGGCC AAGACCGGTA GCGGCAAGAC TGCCGCCTTC
GGCATCGGCC TGCTCAACCC GATCAACCCG CGCTACTTCG GCTGCCAGGC GTTGGTGCTC
TGCCCTACCC GCGAACTCGC CGACCAGGTG GCCAAGGAGC TGCGCCGCCT GGCCCGTGCC
GAGGACAACA TCAAGATCCT GACCCTGTGC GGCGGCGTTT CGCTGGGCCC ACAGATCGCT
TCGCTGGAGC ACGGCGCGCA CATCATCGTC GGCACCCCAG GGCGCATCCA GCAGCACCTG
GACAAAGGCA CCCTGGTCCT GGACGGGTTG AACACCCTGG TGCTGGACGA AGCCGACCGC
ATGCTCGACA TGGGCTTCTT CGACGCCATC GCCAGCATCA TCGGCAAGAC CCCGTCGCGC
CGCCAGACCC TGCTGTTCTC GGCCACCTAC CCGGCCGGCA TCAAGCAACT GGCCGCCGAC
TTCATGCGCA ACCCTCAGCA GGTCAAGGTC GAAAGCCTGC ACACCGACAA CCAGATCGAG
CAGCGTTTCA TCGAGATTGA CCCGCAGCAA CGCCTGGAAG CCGTCACCCG CGTGCTCGGC
CATTACCGCC CGCAGTCGTG CGTAGCGTTC TGCTTCACCA AGCAGCAATG CGAGGACGTG
GTTGCCCACC TGACCGCCAA GGGCATCGTC GCCCAGGCCC TGCACGGCGA CCTGGAGCAG
CGCGACCGTG ACCAGGTGCT GACCATGTTC GCCAACCGCA GCAGCTCGGT GCTGGTGGCT
ACCGACGTGG CCGCGCGCGG CCTGGACATC GATGGCCTGG ACATGGTCAT CAACGTGGAG
CTGGCGCGTG ATGCCGAAAT CCACGTGCAC CGCGTGGGCC GTACCGGCCG CGCCGGCGAG
AAAGGCGTTG CGGTCAGCCT GGTGGCACCG GCCGAAGGCC ACCGCGCCCA GGCCATCGAA
GCGCTGCAGA ATAGCCCGCT GCGCTGGGAC CAGCTGGACA GCCTGAAAAA CAAGGGCGGC
GAGCCCCTGC TGCCGGTGAT GACCACACTG TGCATTGCCG CTGGCCGCAA GGACAAGCTG
CGCCCTGGCG ACATCCTGGG GGCCTTGACC GGTGATGCCG GCATCCCGGG CAAGCAAGTG
GGCAAGATCG CCATCTTCGA CTTCCAGGCG TTTGTGGCCG TGGAGCGGGC GCTGGCCAAG
CAGGCCATGC AGCGGCTGAA CAGCGGCAAG ATCAAGGGTC GCGCCCTGAA AGTCCGCATT
ATCTAA
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| Protein sequence | MTTESTAFAT LPLSTAMLAN LEALGYASMT PIQAQSLPVI LKGQDLIAQA KTGSGKTAAF
GIGLLNPINP RYFGCQALVL CPTRELADQV AKELRRLARA EDNIKILTLC GGVSLGPQIA
SLEHGAHIIV GTPGRIQQHL DKGTLVLDGL NTLVLDEADR MLDMGFFDAI ASIIGKTPSR
RQTLLFSATY PAGIKQLAAD FMRNPQQVKV ESLHTDNQIE QRFIEIDPQQ RLEAVTRVLG
HYRPQSCVAF CFTKQQCEDV VAHLTAKGIV AQALHGDLEQ RDRDQVLTMF ANRSSSVLVA
TDVAARGLDI DGLDMVINVE LARDAEIHVH RVGRTGRAGE KGVAVSLVAP AEGHRAQAIE
ALQNSPLRWD QLDSLKNKGG EPLLPVMTTL CIAAGRKDKL RPGDILGALT GDAGIPGKQV
GKIAIFDFQA FVAVERALAK QAMQRLNSGK IKGRALKVRI I
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